View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1362_low_80 (Length: 202)
Name: NF1362_low_80
Description: NF1362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1362_low_80 |
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Alignment Details
Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 46811195 - 46811272
Alignment:
| Q |
1 |
tgtgaagagaaaaaagacattgaatgactagaaccactatagaggcagggggctgtgatttgtgtgagtaaagtattg |
78 |
Q |
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| T |
46811195 |
tgtgaagagaaaaaagacattgaatgactagaaccactatagaggcagggggctgtgatttgtgtgagtaaagtattg |
46811272 |
T |
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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 46812456 - 46812496
Alignment:
| Q |
89 |
gggaaagtaaggcatactttttcattttcatatttttggag |
129 |
Q |
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| T |
46812456 |
gggaaactaaggaatactttttcattttcatttttttggag |
46812496 |
T |
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