View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1362_low_9 (Length: 539)
Name: NF1362_low_9
Description: NF1362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1362_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 274 - 528
Target Start/End: Original strand, 35288770 - 35289024
Alignment:
| Q |
274 |
catgaacatcaacaaatgtgttaatttcatttgaagattttgattatgtgaagaattgttttacaagtaatggactaattggtgcatgcatgtgtgaggt |
373 |
Q |
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| T |
35288770 |
catgaacatcaacaaatgtgttaatttcatttgaagattttgattatgtgaagaattgttttacaagtaatggactaattggtgcatgcatgtgtgaggt |
35288869 |
T |
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| Q |
374 |
tttcaagcatcttttgcatttgtttagagatacagtagaatgatatttgtttttccttttaggctatgggaagaattcatgctattctatcagacggaac |
473 |
Q |
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| T |
35288870 |
tttcaagcatcttttgcatttgtttaaagatacagtagaatgatatttgtttttccttttaggctatgggaagaattcatgctattctatcagatggaac |
35288969 |
T |
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| Q |
474 |
tgtcgtcaccgatgtcgaagtatggcttcttttctgatcttctttaataacctat |
528 |
Q |
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| T |
35288970 |
tgtcgtcaccgatgtcgaagtatggcttcttttctgatcttctttaataacctat |
35289024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 35288504 - 35288712
Alignment:
| Q |
1 |
gttagtgaaccttgtttcatctcattcattgatagagttttttgctctttgttgttatttgtcattttaggtgaatatgctacgagagaggaacacgagt |
100 |
Q |
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| T |
35288504 |
gttagtgaaccttgtttcatctcattcattgatagagtcttttgctctttgttgttatttgtcattttaggtgaatatgctacgagagaggaacacgagt |
35288603 |
T |
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| Q |
101 |
tatggcaccatcaagtttgttgatataggctcagatgattactctcccgacgagaatcagggcctcgactatcaaactgttagtcccttctctatggcct |
200 |
Q |
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| T |
35288604 |
tatggcaccatcaagtttgttgatataggctcagatgattactctcccgacgagaatcagggcctcgactatcaaactgttagtcccttctctatggcct |
35288703 |
T |
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| Q |
201 |
cgaagctga |
209 |
Q |
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| T |
35288704 |
cgaagctga |
35288712 |
T |
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