View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13630_high_12 (Length: 359)

Name: NF13630_high_12
Description: NF13630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13630_high_12
NF13630_high_12
[»] chr5 (10 HSPs)
chr5 (1-330)||(13447067-13447396)
chr5 (1-318)||(13419516-13419833)
chr5 (1-263)||(13426407-13426669)
chr5 (13-275)||(13413183-13413445)
chr5 (124-244)||(13388988-13389108)
chr5 (123-244)||(13385167-13385288)
chr5 (124-244)||(13454143-13454263)
chr5 (16-70)||(13454035-13454089)
chr5 (4-77)||(13393562-13393635)
chr5 (162-236)||(13393403-13393477)
[»] chr4 (2 HSPs)
chr4 (16-90)||(47601353-47601427)
chr4 (193-233)||(47601530-47601570)


Alignment Details
Target: chr5 (Bit Score: 318; Significance: 1e-179; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 13447067 - 13447396
Alignment:
Q  1 agaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccaccacgagacttaccat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  13447067 agaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccatcacgagacttaccat 13447166  T
Q  101 tgaatgtttgagtatatttggtgcagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctactttgtc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  13447167 tgaatgtttgagtatatttggtgcagtaattctcaatatcgtcggcacaattttcgcaagaacgacatgaatcaaccatgtatcccacccctactttgtc 13447266  T
Q  201 tccaactttaaacttttttactttgcttcccacctctgttactacacccgtaagttcgtgcctatatttattacattagttataaccaaattgagcaatt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  13447267 tccaactttaaacttttttactttgcttcccacctctgttactacacccgtaagttcgtgcctatatttattacattagttataacgaaattgagcaatt 13447366  T
Q  301 attttctactcgtttcttttgattgactca 330  Q
    ||||||||||||||||||||||||||||||    
T  13447367 attttctactcgtttcttttgattgactca 13447396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 13419516 - 13419833
Alignment:
Q  1 agaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccaccacgagacttaccat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||  |||||| ||||| ||||  ||     
T  13419516 agaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagtaacctccatatgtgacggtgccatcacgatactttgcac 13419615  T
Q  101 tgaatgtttgagtatatttggtgcagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctactttgtc 200  Q
       ||||    ||| || | | |||||||||||||| |||||| ||||||||||  || ||||||||||||||||||||||||||||| || ||||||||    
T  13419616 cacatgtgactgtaaatgttgggcagtaattctcaagatcgtcagcacaattttggcatgaacgacatgaatcaaccatgtatcccacaccaactttgtc 13419715  T
Q  201 tccaactttaaacttttttactttgcttcccacctctgttactacacccgtaagttcgtgcctatatttattacattagttataaccaaattgagcaatt 300  Q
    ||||||||||||||||| |||||||||||| ||||| ||||||| ||||| |||||| |||||  |||||||| || | |||||| |||||||| |||||    
T  13419716 tccaactttaaacttttctactttgcttccaacctcggttactatacccgcaagttcatgcctgcatttattaaataaattataaacaaattgaacaatt 13419815  T
Q  301 attttctactcgtttctt 318  Q
    |||| |||||| ||||||    
T  13419816 atttactactcatttctt 13419833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 13426407 - 13426669
Alignment:
Q  1 agaggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccaccacgagacttaccat 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||| ||||   ||||| ||||| ||||| ||     
T  13426407 agaggtaagctatcaggaatgcgaatcacaaagtgctcatctgcaaccattgagtcggaataacctccatatgtgacgctgccatcacgatacttagcac 13426506  T
Q  101 tgaatgtttgagtatatttggtgcagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctactttgtc 200  Q
       ||||    || | || || |||||||||||||| ||| || ||||||||||| || ||||||||||||||||||||||||||||| |||||||||||    
T  13426507 cacatgtaactgtttgttgggggcagtaattctcaagatcttccgcacaattttcgcatgaacgacatgaatcaaccatgtatcccactcctactttgtc 13426606  T
Q  201 tccaactttaaacttttttactttgcttcccacctctgttactacacccgtaagttcgtgcct 263  Q
    ||||||||||||||||| |||||||||||| ||||||||||| | ||||| |||||| |||||    
T  13426607 tccaactttaaacttttctactttgcttccaacctctgttacaatacccgcaagttcatgcct 13426669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 13 - 275
Target Start/End: Original strand, 13413183 - 13413445
Alignment:
Q  13 tcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccaccacgagacttaccattgaatgtttgag 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||  || ||| ||||| ||||  ||    ||||         
T  13413183 tcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagtaacctccataagtgacggttccatcacgatacttggcaccacatgtgacta 13413282  T
Q  113 tatatttggtgcagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctactttgtctccaactttaaa 212  Q
     | |||||| |||||||||||||| || |||   ||||| ||  || || ||||||||||||| || ||| || || |||||||||||||||||||||||    
T  13413283 caaatttggggcagtaattctcaagattgtcattacaatcttggcatgatcgacatgaatcaatcaagtagccaacacctactttgtctccaactttaaa 13413382  T
Q  213 cttttttactttgcttcccacctctgttactacacccgtaagttcgtgcctatatttattaca 275  Q
    ||| |  ||||||||||| || |||||||||| ||||| ||| || ||||| |||||||||||    
T  13413383 cttctccactttgcttcctacttctgttactatacccgcaagctcatgcctgtatttattaca 13413445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 124 - 244
Target Start/End: Complemental strand, 13389108 - 13388988
Alignment:
Q  124 cagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctactttgtctccaactttaaacttttttactt 223  Q
    |||||||| |||| || |||  ||||||||| ||| || |||||||||||||||||||| || || ||||||||||||||||| || ||||||| |||||    
T  13389108 cagtaattttcaagattgtcaacacaattttgacatgatcgacatgaatcaaccatgtagccaacacctactttgtctccaacattgaacttttctactt 13389009  T
Q  224 tgcttcccacctctgttacta 244  Q
    |||||||||||| ||| ||||    
T  13389008 tgcttcccacctttgtcacta 13388988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 123 - 244
Target Start/End: Complemental strand, 13385288 - 13385167
Alignment:
Q  123 gcagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctactttgtctccaactttaaacttttttact 222  Q
    ||||||||| |||| || |||  ||||||||| ||| || |||||||||||||  ||||| || || ||||||||||||||||| || ||||||| ||||    
T  13385288 gcagtaattttcaagattgtcaacacaattttgacacgatcgacatgaatcaattatgtagccaacacctactttgtctccaacattgaacttttctact 13385189  T
Q  223 ttgcttcccacctctgttacta 244  Q
    ||||||||||||| ||| ||||    
T  13385188 ttgcttcccacctttgtcacta 13385167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 124 - 244
Target Start/End: Original strand, 13454143 - 13454263
Alignment:
Q  124 cagtaattctcaatatcgtcggcacaattttcacaagaacgacatgaatcaaccatgtatcccacccctactttgtctccaactttaaacttttttactt 223  Q
    ||||||||||||| ||  ||  ||||||||| ||| ||  |||| |||||||||| | ||||||| |||||| ||||||||||||| |||||||| ||||    
T  13454143 cagtaattctcaagattatcaacacaattttgacatgagtgacaagaatcaaccaagcatcccacacctactctgtctccaactttgaactttttcactt 13454242  T
Q  224 tgcttcccacctctgttacta 244  Q
    |||||||||| ||||| ||||    
T  13454243 tgcttcccacttctgtaacta 13454263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 13454035 - 13454089
Alignment:
Q  16 ggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccat 70  Q
    |||||||||| ||||||||||||||| | |||||||||||| ||||| |||||||    
T  13454035 ggaatgcgaaacacaaagtgctcgtcggaaaccattgagtcagagaagcctccat 13454089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 77
Target Start/End: Complemental strand, 13393635 - 13393562
Alignment:
Q  4 ggtaagctatcaggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgat 77  Q
    ||||||| |||||||||| |||  | ||||||||| ||||||||||||||||| ||| | |||||||| |||||    
T  13393635 ggtaagccatcaggaatgtgaactataaagtgctcatctgcaaccattgagtcagagtaccctccatatgtgat 13393562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 236
Target Start/End: Complemental strand, 13393477 - 13393403
Alignment:
Q  162 acgacatgaatcaaccatgtatcccacccctactttgtctccaactttaaacttttttactttgcttcccacctc 236  Q
    |||||| |||||||| | | ||||||| || ||||||||||||| ||| ||||| | |||||||||||| |||||    
T  13393477 acgacacgaatcaactaagcatcccacacccactttgtctccaattttgaacttctctactttgcttcctacctc 13393403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 90
Target Start/End: Original strand, 47601353 - 47601427
Alignment:
Q  16 ggaatgcgaatcacaaagtgctcgtctgcaaccattgagtcggagaaacctccataggtgatagtgccaccacga 90  Q
    |||||| ||| |||||||||||||||| ||||||||||||| ||| ||||||| || ||| | |||||| |||||    
T  47601353 ggaatgtgaaccacaaagtgctcgtctacaaccattgagtcagagtaacctccgtatgtggtggtgccatcacga 47601427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 233
Target Start/End: Original strand, 47601530 - 47601570
Alignment:
Q  193 actttgtctccaactttaaacttttttactttgcttcccac 233  Q
    ||||||||||||||||| ||||||| |||||||||||||||    
T  47601530 actttgtctccaactttgaacttttctactttgcttcccac 47601570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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