View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13630_high_15 (Length: 315)
Name: NF13630_high_15
Description: NF13630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13630_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 27238127 - 27237827
Alignment:
| Q |
1 |
ctcacaagcgttaatcatttggtcatgaatgttagctactgatatttacttttattttactaaggttgactcttcttcggcaagcacacatggggatgag |
100 |
Q |
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| T |
27238127 |
ctcacaatcattaatcatttggtcatgaatgttagctactgatatttacttt-attttactaaggttgactcttc---ggcaagcacacatggggatgag |
27238032 |
T |
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| Q |
101 |
agtttgcttaactctcttttggcaacagttactactaaagatgagtcttctacatatgaattcttggttgcaaatagtgaaaatgagcattgtaaaaagc |
200 |
Q |
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| T |
27238031 |
agtttgcttgactctcttttggcaacagttactactaaagatgagtcttctacatatgaattcttggttgcaaatagtgaaaatgagcattgtaaaaagc |
27237932 |
T |
|
| Q |
201 |
tgctgtcaatgtggagcgggtgaggcttagagttctttgttcctcttactctcttgtcaaatttccttgtttttacattattcttttagccaattttaat |
300 |
Q |
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| T |
27237931 |
tgctgtcaatgtggagcgggtgaggcttgtagttctttgtttctcttactctcttgtcaaatttccttgtttttacattattcttttagccaatttttat |
27237832 |
T |
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| Q |
301 |
ctctg |
305 |
Q |
| |
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||||| |
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| T |
27237831 |
ctctg |
27237827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 155 - 302
Target Start/End: Complemental strand, 27216378 - 27216231
Alignment:
| Q |
155 |
tatgaattcttggttgcaaatagtgaaaatgagcattgtaaaaagctgctgtcaatgtggagcgggtgaggcttagagttctttgttcctcttactctct |
254 |
Q |
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|||||||| |||||||||||||||||||| ||| | ||||||||||||||||||||||||||||| ||||||| ||||||||||| || ||||||||| |
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| T |
27216378 |
tatgaatttttggttgcaaatagtgaaaacgagaacggtaaaaagctgctgtcaatgtggagcgggcgaggcttgtagttctttgtttcttttactctct |
27216279 |
T |
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| Q |
255 |
tgtcaaatttccttgtttttacattattcttttagccaattttaatct |
302 |
Q |
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|||||| |||| || |||||||||||||||||||||| ||||| |||| |
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| T |
27216278 |
tgtcaagtttctttatttttacattattcttttagccgatttttatct |
27216231 |
T |
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