View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13630_high_16 (Length: 313)
Name: NF13630_high_16
Description: NF13630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13630_high_16 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 90 - 313
Target Start/End: Original strand, 38824882 - 38825100
Alignment:
| Q |
90 |
ttccttgcgagtttaacgactaatcgcaagtcgagcagaataaactcaatttcatttcatagtttgctaaaaattgagtttataggccgagtcaacttga |
189 |
Q |
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| T |
38824882 |
ttccttgtgagtttaacgactaatcgcaagtcgagcagaataaactgaatttcatttcatagtttgctaaaaattgagtttataggccgagtcaacttga |
38824981 |
T |
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| Q |
190 |
aattgatacctaaacttgtggaatcaagttgaattaactcgcgattttaacgaagttgctcacaattttgtttaaccataatttgtctgcgatggaacaa |
289 |
Q |
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| T |
38824982 |
aattgatacctaaacttgtggaatc-----gagttaactcgcgattttaaccaagttgctcacaattttctttaaccataatttgtctgcgatggaacaa |
38825076 |
T |
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| Q |
290 |
gtctcccttgtttgagtgtatagt |
313 |
Q |
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| T |
38825077 |
gtctcccttgtttgagtgtatagt |
38825100 |
T |
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