View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13630_high_1_N (Length: 1065)
Name: NF13630_high_1_N
Description: NF13630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13630_high_1_N |
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Alignment Details
Target: chr1 (Bit Score: 653; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 653; E-Value: 0
Query Start/End: Original strand, 39 - 715
Target Start/End: Original strand, 41976449 - 41977124
Alignment:
| Q |
39 |
agaatcatcagtgatttctgcctctgatatttgtttctcttggcagctagagctgcacaagaagccataaaaacttgacaattagcacagccttcaaata |
138 |
Q |
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| T |
41976449 |
agaatcatcagtgatttctgcctctgatatttgtttctcttggcagctagagctgcacaagaagccataaaaacttgacaattagcacagccttcaaata |
41976548 |
T |
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| Q |
139 |
tccaaggtccataaatacaacttttattccaaaactaaaatatctccaggcatatggtcaaatttaaacggctcaaaataaactttttacatgaaggaca |
238 |
Q |
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| T |
41976549 |
tccaaggtccataaatacaacttttattccaaaactaaaatatctccaggcatatggtcaaatttaaacggctcaaaataaactttttacatgaaggaca |
41976648 |
T |
|
| Q |
239 |
gtacaagaattatgtccagagctatgtgcaaaccactataacagtatgattactacttagttgaccccaacccgctttgagatttgacattgaagttgat |
338 |
Q |
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| T |
41976649 |
gaacaagaattatgtccagagctatgtgcaaaccactataacagtatgattactacttagttgaccc-aacccgctttgagatttgacattgaagttgat |
41976747 |
T |
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| Q |
339 |
tgttagtatactaaaatgttatcaaaatagtgaatcactataaaggcatatggtgcatgcactaaaatattatcttgccaccttgagcacataatggaac |
438 |
Q |
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| T |
41976748 |
tgttagtatactaaaatgttatcaaaatagtgaatcactataaaggcatatggtgcatgcactaaaatattatcttgccaccttgagcacataatggaac |
41976847 |
T |
|
| Q |
439 |
atatttgaattgaagactagcatcatccacataaattcccaattaaaaacaaacatcaatgcagcacaagaaccaaatcctataagtatagagcatattt |
538 |
Q |
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| T |
41976848 |
atatttgaattgaagactagcataatccacataaattcccaattaaaaacaaacatcaatgcagcacaagaaccaaatcctataagtataaagcatattt |
41976947 |
T |
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| Q |
539 |
aattatttatatgctgcagcgtgcatgtttgatatcacggtggctcactgtgattctgaaatccaccacgataccaaacaattagtaatgaagaaacagc |
638 |
Q |
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| T |
41976948 |
aattatttatatgctgcagcgtgcatgtttgatatcacggtggctcactgtgattctgaaatccaccacgataccaaacaattagtaatgaagaaacagc |
41977047 |
T |
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| Q |
639 |
tattgcactgttaaacaaataaagcaacagcatagtcacccgcagaaataaatataaaccacattaccaggaatagt |
715 |
Q |
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| T |
41977048 |
tattgcactgttaaacaaataaagcaacagcatagtcagccgcagaaataaatataaaccacattaccaggaatagt |
41977124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 742 - 1058
Target Start/End: Original strand, 41977151 - 41977470
Alignment:
| Q |
742 |
caggatctcattcaaattgtactcacccattatttcatggggtagaccaaagtcataatcgttccttttctttctgatgtagatatataccagcagcagt |
841 |
Q |
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| T |
41977151 |
caggatctcattcaaattgtactcacccattatttcatggggtagaccaaagtcataatcgttccttttctttctgatgtagatatataccagcagcagt |
41977250 |
T |
|
| Q |
842 |
accacgcagaaaacaaaaagacaagaaaagactattgcaactttaccccgagtcgataatccgccatgctcccaaaacataggacatgatggaagagatg |
941 |
Q |
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| T |
41977251 |
accacgcagaaaacaaaaagacaagaaaagactattgcaattttaccccgagtcgataatccgccatgctcccaaaacataggacatgatggaagtgatg |
41977350 |
T |
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| Q |
942 |
gtacaccgcacaaacccttgttgcttgagagactgaatt-aaaacaaatcaaattgaacac--nnnnnnngagattatttctcattgggtaatcataata |
1038 |
Q |
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| T |
41977351 |
gtacaccgcacaaacccttgttgcttgagagactgaattaaaaacaaatcaaattgaacacaaaaaaaaagagattatttctcattgggtaatcataata |
41977450 |
T |
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| Q |
1039 |
atactttcctttgatgatgt |
1058 |
Q |
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| T |
41977451 |
atactttcctttgataatgt |
41977470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 1e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 775 - 976
Target Start/End: Complemental strand, 22090185 - 22089984
Alignment:
| Q |
775 |
ttcatggggtagaccaaagtcataatcgttccttttctttctgatgtagatatataccagcagcagtaccacgcagaaaacaaaaagacaagaaaagact |
874 |
Q |
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|||||| || ||| ||||||||||||| |||||| || | ||||| |||||||| |||||||| | || || |||||||||||||||| ||| | | || |
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| T |
22090185 |
ttcatgaggcagagcaaagtcataatcattccttctcctcctgatatagatatagaccagcagaactatcaaacagaaaacaaaaagactagacacgcct |
22090086 |
T |
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| Q |
875 |
attgcaactttaccccgagtcgataatccgccatgctcccaaaacataggacatgatggaagagatggtacaccgcacaaacccttgttgcttgagagac |
974 |
Q |
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| T |
22090085 |
attgcaattttcccctcggtagataatttgccattcttccaaaacataggacaagctggcagagatggtacaccgcacaaacctttgttgccagagagac |
22089986 |
T |
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| Q |
975 |
tg |
976 |
Q |
| |
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|| |
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| T |
22089985 |
tg |
22089984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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