View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13630_high_3 (Length: 918)

Name: NF13630_high_3
Description: NF13630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13630_high_3
NF13630_high_3
[»] chr4 (9 HSPs)
chr4 (1-875)||(18342811-18343685)
chr4 (795-844)||(506506-506555)
chr4 (795-844)||(18042075-18042124)
chr4 (1-113)||(48288755-48288862)
chr4 (713-868)||(50593542-50593696)
chr4 (383-429)||(22101579-22101625)
chr4 (883-917)||(18343719-18343753)
chr4 (111-189)||(41737432-41737510)
chr4 (807-845)||(18179696-18179734)
[»] scaffold0002 (6 HSPs)
scaffold0002 (341-875)||(163684-164218)
scaffold0002 (1-282)||(164272-164553)
scaffold0002 (380-851)||(277909-278382)
scaffold0002 (42-253)||(277580-277794)
scaffold0002 (804-846)||(190645-190687)
scaffold0002 (883-917)||(163611-163645)
[»] chr2 (2 HSPs)
chr2 (1-557)||(36840584-36841142)
chr2 (795-843)||(17442387-17442435)
[»] scaffold0702 (1 HSPs)
scaffold0702 (454-783)||(6873-7202)
[»] chr8 (2 HSPs)
chr8 (454-783)||(35194958-35195287)
chr8 (168-282)||(11542905-11543019)
[»] chr6 (5 HSPs)
chr6 (1-282)||(14249173-14249454)
chr6 (822-875)||(31058812-31058865)
chr6 (795-844)||(14543003-14543052)
chr6 (883-917)||(31058739-31058773)
chr6 (807-845)||(4639385-4639423)
[»] scaffold1779 (2 HSPs)
scaffold1779 (374-850)||(48-524)
scaffold1779 (34-245)||(662-873)
[»] chr3 (6 HSPs)
chr3 (67-282)||(46699127-46699342)
chr3 (340-545)||(18374946-18375148)
chr3 (755-856)||(54630176-54630277)
chr3 (795-844)||(17223707-17223756)
chr3 (219-282)||(18375193-18375254)
chr3 (805-846)||(13226970-13227011)
[»] chr5 (2 HSPs)
chr5 (458-586)||(10258309-10258437)
chr5 (795-844)||(19153780-19153829)
[»] chr7 (6 HSPs)
chr7 (219-280)||(46634212-46634273)
chr7 (341-477)||(46634322-46634463)
chr7 (795-844)||(6930438-6930487)
chr7 (805-846)||(1399882-1399923)
chr7 (805-846)||(18961072-18961112)
chr7 (805-846)||(18993033-18993073)
[»] scaffold0008 (1 HSPs)
scaffold0008 (795-844)||(265168-265217)
[»] scaffold0625 (1 HSPs)
scaffold0625 (805-846)||(8623-8664)
[»] chr1 (2 HSPs)
chr1 (592-668)||(5478421-5478497)
chr1 (807-845)||(31265991-31266029)
[»] scaffold0477 (1 HSPs)
scaffold0477 (807-845)||(8693-8731)
[»] scaffold0330 (1 HSPs)
scaffold0330 (883-917)||(13377-13411)


Alignment Details
Target: chr4 (Bit Score: 771; Significance: 0; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 771; E-Value: 0
Query Start/End: Original strand, 1 - 875
Target Start/End: Original strand, 18342811 - 18343685
Alignment:
Q  1 ttatcatcatactttattattataccattactacgttttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatgaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18342811 ttatcatcatactttattattataccattactacgttttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatgaat 18342910  T
Q  101 ttggtactgcttttttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactagctcctatgattcgaatacacatcaattcgcgggc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18342911 ttggtactgcttttttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactagctcctatgattcgaatacacatcaattcgcgggc 18343010  T
Q  201 tccgctattatcggctacatttaaataggtttgaggttgaatcatatcatttttttctatctttcagtcaaaaagttgaagtnnnnnnnntattctgtgt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||    
T  18343011 tccgctattatcggctacatttaaataggtttgaggttgaatcatatcatttttttctatctttcagtcaaaaagttgaagtaaaaaaaatattctgtgt 18343110  T
Q  301 t-cnnnnnnnnnnnnngaaaccaacaattaccannnnnnncatactaaagacctatttcgttctaatgattattctgaaagaatgaattgagttcgtata 399  Q
    | |             |||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18343111 tacaaaaaaaaaaaaagaaaccaacaattaccatttttt-catactaaagacctatttcgttctaatgattattctgaaagaatgaattgagttcgtata 18343209  T
Q  400 ggcattttggatgccgctattgaaatagcctttctagctatattttctgggacgcctcccatttcataaagtattttgccgggtttaacgacagctaccc 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  18343210 ggcattttggatgccgctattgaaatagcctttctagctatattttctgggacccctcccatttcataaagtattttgccgggtttaacgacagctaccc 18343309  T
Q  500 aatattcgggagatccttttcccgaacccatacgcgtttcggtaggtcttactgtaacgggtttgtctggaaatatgcgtacccatattttcccacctcg 599  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  18343310 aatattcgggagatccttttcccgaacccatacgcgtttcggtaggtcttactgtaacaggtttgtctggaaatatgcgtacccatattttcccacctcg 18343409  T
Q  600 gcgaacatttcgtgacattgcccgtcgccctgcttctatttgtctagatgtgatccaagcgggctcaagtgcctgaagagcatattttccgaaggaaatt 699  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18343410 gcgaacatttcgtgacattgcccgtcgccctgcttctatttgtctagatgtgatccaagcgggctcaagtgcctgaagagcatattttccgaaggaaatt 18343509  T
Q  700 gtattacctcgataggcttttcctttcattcttcctcgatgttgtttacggaatctggttcttttggggttatagttgatggttatttctcaattccatc 799  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18343510 gtattacctcgataggcttttcctttcattcttcctcgatgttgtttacggaatctggttcttttggggttatagttgatggttatttctcaattccatc 18343609  T
Q  800 tctattacagaaccgtacatgagattttcacctcatacggctcctcgcgaataaatcgattcaaaaatatttaacc 875  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18343610 tctattacagaaccgtacatgagattttcacctcatacggctcctcgcgaataaatcgattcaaaaatatttaacc 18343685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 795 - 844
Target Start/End: Complemental strand, 506555 - 506506
Alignment:
Q  795 ccatctctattacagaaccgtacatgagattttcacctcatacggctcct 844  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  506555 ccatctctattacagaaccgtacatgagattttcacctcatacggctcct 506506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 795 - 844
Target Start/End: Original strand, 18042075 - 18042124
Alignment:
Q  795 ccatctctattacagaaccgtacatgagattttcacctcatacggctcct 844  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18042075 ccatctctattacagaaccgtacatgagattttcacctcatacggctcct 18042124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 48288755 - 48288862
Alignment:
Q  1 ttatcatcatactttattattataccattactacgttttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatgaat 100  Q
    |||||||||||||||||||||||| ||| || |||||||||||||||||||    ||| ||||  |  ||| ||||||||||||||||||||||||||||    
T  48288755 ttatcatcatactttattattatatcatcaccacgttttagttctttacaa----gtataatt-gactcctaatcacttcagatctttctaaagatgaat 48288849  T
Q  101 ttggtactgcttt 113  Q
    ||| |||| ||||    
T  48288850 ttgatactccttt 48288862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 713 - 868
Target Start/End: Complemental strand, 50593696 - 50593542
Alignment:
Q  713 aggcttttcctttcattcttcctcgatgttgtttacggaatctggttcttttggggttatagttgatggttatttctcaattccatctctattacagaac 812  Q
    ||||||||| ||| ||| ||||| |||||||||||  | |||||||||||| ||||||||||||  ||||| ||| ||||||| |||||||||||| |||    
T  50593696 aggcttttcttttaatttttccttgatgttgtttattggatctggttctttgggggttatagttagtggttgtttatcaattctatctctattaca-aac 50593598  T
Q  813 cgtacatgagattttcacctcatacggctcctcgcgaataaatcgattcaaaaata 868  Q
     | || | ||||||||  |||| ||||||| ||| | ||||||||||  |||||||    
T  50593597 tgcacgttagattttcgtctcacacggctcatcgtgcataaatcgatcaaaaaata 50593542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 383 - 429
Target Start/End: Original strand, 22101579 - 22101625
Alignment:
Q  383 tgaattgagttcgtataggcattttggatgccgctattgaaatagcc 429  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||    
T  22101579 tgaattgagttcgtatagacattttggatgccgctattgaaatagcc 22101625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 883 - 917
Target Start/End: Original strand, 18343719 - 18343753
Alignment:
Q  883 tttaaaatagaatacaatcgcgggattttttgaca 917  Q
    |||||||||||||||||||||||||||||||||||    
T  18343719 tttaaaatagaatacaatcgcgggattttttgaca 18343753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 189
Target Start/End: Complemental strand, 41737510 - 41737432
Alignment:
Q  111 ttttttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactagctcctatgattcgaatacacatc 189  Q
    |||||| ||||| ||||||| | ||||||||| |||||||||  | ||||||||| ||||| ||||| |||||||||||    
T  41737510 tttttttattactgcaacaaaattgtcaccaacataagcataatgccgattactatctcctgtgatttgaatacacatc 41737432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 807 - 845
Target Start/End: Original strand, 18179696 - 18179734
Alignment:
Q  807 cagaaccgtacatgagattttcacctcatacggctcctc 845  Q
    ||||||||||| ||||||||||| |||||||||||||||    
T  18179696 cagaaccgtacgtgagattttcatctcatacggctcctc 18179734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 471; Significance: 0; HSPs: 6)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 341 - 875
Target Start/End: Complemental strand, 164218 - 163684
Alignment:
Q  341 atactaaagacctatttcgttctaatgattattctgaaagaatgaattgagttcgtataggcattttggatgccgctattgaaatagcctttctagctat 440  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  164218 atactaaagacctatttcgatctaatgattattctgaaagaatgaattgagttcttataggcattttggatgccgctattgaaatagcctttctagctat 164119  T
Q  441 attttctgggacgcctcccatttcataaagtattttgccgggtttaacgacagctacccaatattcgggagatccttttcccgaacccatacgcgtttcg 540  Q
    |||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  164118 attttctgggaccccgcccatttcataaagtattttgtcgggtttaacgacagctacccaatattcgggagatccttttcccgaacccatacgcgtttcg 164019  T
Q  541 gtaggtcttactgtaacgggtttgtctggaaatatgcgtacccatattttcccacctcggcgaacatttcgtgacattgcccgtcgccctgcttctattt 640  Q
    |||| ||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  164018 gtagatcttaatgtaacaggtttgtctggaaatatgcatacccatattttcccacctcggcgaacatttcgtgacattgcccatcgccctacttctattt 163919  T
Q  641 gtctagatgtgatccaagcgggctcaagtgcctgaagagcatattttccgaaggaaattgtattacctcgataggcttttcctttcattcttcctcgatg 740  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  163918 gtctagatgtgatccaagcgggctcaagtgcctaaagaacatatttttcgaaggaaattgtattacctcgataggcttttcctttcattcttcctcgatg 163819  T
Q  741 ttgtttacggaatctggttcttttggggttatagttgatggttatttctcaattccatctctattacagaaccgtacatgagattttcacctcatacggc 840  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  163818 ttgtttgcggaatctggttcttttggggttatagttgatagttatttctcaattccatctctattacagaaccgtacatgagattttcacctcatacggc 163719  T
Q  841 tcctcgcgaataaatcgattcaaaaatatttaacc 875  Q
    |||||||||||||||||||||||||||||||||||    
T  163718 tcctcgcgaataaatcgattcaaaaatatttaacc 163684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 164553 - 164272
Alignment:
Q  1 ttatcatcatactttattattataccattactacgttttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatgaat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||    
T  164553 ttatcatcatactttattattataccattactacgttttagttctttacaagtacgtacagttacaaccctgatcacttcagatatttctaaagatgaat 164454  T
Q  101 ttggtactgcttttttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactagctcctatgattcgaatacacatcaattcgcgggc 200  Q
    ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||    
T  164453 ttgatactgcttttttgattacatcaacaacaatgtcaccaatataagcataccgttgattactagctcctatgattcgaatacagatcaattcacgggc 164354  T
Q  201 tccgctattatcggctacatttaaataggtttgaggttgaatcatatcatttttttctatctttcagtcaaaaagttgaagt 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  164353 tccgctattatcggctacatttaaataggtttgaggttgaatcatatcattttttactatctttcagtcaaaaagttgaagt 164272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 380 - 851
Target Start/End: Original strand, 277909 - 278382
Alignment:
Q  380 gaatgaattgagttcgtataggcattttggatgccgctattgaaatagcctttctagctatattttctgggacgcctcccatttcataaagtattttgcc 479  Q
    |||| |||||| ||||||| ||||||||    |||||||| || |||||   |||||||| | |||| |  || || |||||||||||||||||    ||    
T  277909 gaataaattgacttcgtatgggcattttactggccgctatggagatagctgctctagctacagtttcagatactccccccatttcataaagtatacgacc 278008  T
Q  480 gggtttaacgacagctacccaatattcgggagatccttttcccgaacccatacgcgtttcggtaggtcttactgtaacgggtttgtctggaaatatgcgt 579  Q
     |||||||| || ||||||||||||||||| || || |||||||| |||||||| ||||| || ||||||| |||||| |||||||| |||||||| |||    
T  278009 tggtttaacaacggctacccaatattcgggggacccctttcccgagcccatacgtgtttccgtgggtcttagtgtaaccggtttgtcgggaaatatacgt 278108  T
Q  580 acccatattttcccacctcggcgaacatttcgtgacattgcccgtcgccctgcttctatttgtctagatgtgatccaagcgggctcaagtgcctgaagag 679  Q
    ||||||||||| ||||| || ||  ||| |||||  ||||| | ||| ||||||||||| ||||| |  |||||||||||||| |||||||| |||||||    
T  278109 acccatatttttccaccacgacgtgcatatcgtgttattgctcttcgtcctgcttctatctgtctcgccgtgatccaagcgggttcaagtgcttgaagag 278208  T
Q  680 catattttccgaaggaaattgtattacctcgataggcttttcctttcattcttcctcgatgttgtttacggaatctggttcttttggggttatagttgat 779  Q
    ||||| | || ||  ||||   ||| |||||  ||| |||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||| |||    
T  278209 catatctaccaaaacaaatacgattgcctcggaaggattttcctttcattcttcctctatgttgtttgcgaaatctggttcttttggggttatagtcgat 278308  T
Q  780 ggt--tatttctcaattccatctctattacagaaccgtacatgagattttcacctcatacggctcctcgcgaat 851  Q
    |||  | ||||| | ||||||||||| | || ||| | |||||||| ||||  ||||| | |||||||||||||    
T  278309 ggttctctttcttagttccatctctactccaaaactggacatgagagtttcttctcatccagctcctcgcgaat 278382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #4
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 42 - 253
Target Start/End: Original strand, 277580 - 277794
Alignment:
Q  42 ttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatgaatttggtac--tgcttttttgattacagcaacaacaatgtcac 139  Q
    ||||||||| ||||||||||||||||| |  || ||||| |||||||||| ||  | ||||||  |  ||| | ||||||||||||||||| ||  ||||    
T  277580 ttctttacatgtacgtacaattacagctcgaattacttcggatctttctagag--gcatttggggcaatgcgtctttgattacagcaacaataacatcac 277677  T
Q  140 caatataagcataccgtcgattactagc---tcctatgattcgaatacacatcaattcgcgggctccgctattatcggctacatttaaataggtttgagg 236  Q
    |||||  |||||| ||  |||||| |||   |||||||| |||||||||||||||||  || ||||| ||||| || ||||||||||||  ||| |||||    
T  277678 caatacgagcatatcgctgattaccagcagctcctatgactcgaatacacatcaattttcgagctccactattgtctgctacatttaaaagggtctgagg 277777  T
Q  237 ttgaatcatatcatttt 253  Q
    ||||||||||| |||||    
T  277778 ttgaatcatattatttt 277794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 804 - 846
Target Start/End: Complemental strand, 190687 - 190645
Alignment:
Q  804 ttacagaaccgtacatgagattttcacctcatacggctcctcg 846  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  190687 ttacagaaccgtacatgagattttcacctcatacggctcctcg 190645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 883 - 917
Target Start/End: Complemental strand, 163645 - 163611
Alignment:
Q  883 tttaaaatagaatacaatcgcgggattttttgaca 917  Q
    |||||||||||||| ||||||||||||||||||||    
T  163645 tttaaaatagaatagaatcgcgggattttttgaca 163611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 460; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 1 - 557
Target Start/End: Original strand, 36840584 - 36841142
Alignment:
Q  1 ttatcatcatactttattattataccattactacgttttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatgaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36840584 ttatcatcatactttattattataccattactacgttttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatgaat 36840683  T
Q  101 ttggtactgcttttttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactagctcctatgattcgaatacacatcaattcgcgggc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36840684 ttggtactgcttttttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactagctcctatgattcgaatacacatcaattcgcgggc 36840783  T
Q  201 tccgctattatcggctacatttaaataggtttgaggttgaatcatatcatttttttctatctttcagtcaaaaagttgaagtnnnnnnnntattctgtgt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||    
T  36840784 tccgctattatcggctacatttaaataggtttgaggttgaatcatatcatttttttctatctttcagtcaaaaagttgaagtaaaaaaaatattctgtgt 36840883  T
Q  301 tc--nnnnnnnnnnnnngaaaccaacaattaccannnnnnncatactaaagacctatttcgttctaatgattattctgaaagaatgaattgagttcgtat 398  Q
    ||               |||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36840884 tcaaaaaaaaaaaaaaagaaaccaacaattaccatttttttcatactaaagacctatttcgttctaatgattattctgaaagaatgaattgagttcgtat 36840983  T
Q  399 aggcattttggatgccgctattgaaatagcctttctagctatattttctgggacgcctcccatttcataaagtattttgccgggtttaacgacagctacc 498  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  36840984 aggcattttggatgccgctattgaaatagcctttctagctatattttctgggacccctcccatttcataaagtattttgccgggtttaacgacagctacc 36841083  T
Q  499 caatattcgggagatccttttcccgaacccatacgcgtttcggtaggtcttactgtaac 557  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36841084 caatattcgggagatccttttcccgaacccatacgcgtttcggtaggtcttactgtaac 36841142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 795 - 843
Target Start/End: Original strand, 17442387 - 17442435
Alignment:
Q  795 ccatctctattacagaaccgtacatgagattttcacctcatacggctcc 843  Q
    |||||||||||||| |||||||||||||||||||||||| |||||||||    
T  17442387 ccatctctattacaaaaccgtacatgagattttcacctcgtacggctcc 17442435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0702 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: scaffold0702
Description:

Target: scaffold0702; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 454 - 783
Target Start/End: Complemental strand, 7202 - 6873
Alignment:
Q  454 cctcccatttcataaagtattttgccgggtttaacgacagctacccaatattcgggagatccttttcccgaacccatacgcgtttcggtaggtcttactg 553  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||    
T  7202 cctcccatttcataaagtattttgccgggtttaacgacagctacccaatattcgggagattcttttcctgaacccatacgcgtttcggtaggtattactg 7103  T
Q  554 taacgggtttgtctggaaatatgcgtacccatattttcccacctcggcgaacatttcgtgacattgcccgtcgccctgcttctatttgtctagatgtgat 653  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||| ||||||||||||| ||||||||||||||||||||||||    
T  7102 taacaggtttgtctggaaatatacgtacccatattttcccacctcggcaaacattttgtgatattgcccgtcgccttgcttctatttgtctagatgtgat 7003  T
Q  654 ccaagcgggctcaagtgcctgaagagcatattttccgaaggaaattgtattacctcgataggcttttcctttcattcttcctcgatgttgtttacggaat 753  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  7002 ccaagcgggctcaagtgcctgaagagcatattttccgaaggaaattgtattacctcgataggcttttcctttcattcttcctcgatgttgtttacgaaat 6903  T
Q  754 ctggttcttttggggttatagttgatggtt 783  Q
    ||||||||||||||||||||||||||||||    
T  6902 ctggttcttttggggttatagttgatggtt 6873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 454 - 783
Target Start/End: Complemental strand, 35195287 - 35194958
Alignment:
Q  454 cctcccatttcataaagtattttgccgggtttaacgacagctacccaatattcgggagatccttttcccgaacccatacgcgtttcggtaggtcttactg 553  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||    
T  35195287 cctcccatttcataaagtattttgccgggtttaacgacagctacccaatattcgggagattcttttcctgaacccatacgcgtttcggtaggtattactg 35195188  T
Q  554 taacgggtttgtctggaaatatgcgtacccatattttcccacctcggcgaacatttcgtgacattgcccgtcgccctgcttctatttgtctagatgtgat 653  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||| ||||||||||||| ||||||||||||||||||||||||    
T  35195187 taacaggtttgtctggaaatatacgtacccatattttcccacctcggcaaacattttgtgatattgcccgtcgccttgcttctatttgtctagatgtgat 35195088  T
Q  654 ccaagcgggctcaagtgcctgaagagcatattttccgaaggaaattgtattacctcgataggcttttcctttcattcttcctcgatgttgtttacggaat 753  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  35195087 ccaagcgggctcaagtgcctgaagagcatattttccgaaggaaattgtattacctcgataggcttttcctttcattcttcctcgatgttgtttacgaaat 35194988  T
Q  754 ctggttcttttggggttatagttgatggtt 783  Q
    ||||||||||||||||||||||||||||||    
T  35194987 ctggttcttttggggttatagttgatggtt 35194958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 168 - 282
Target Start/End: Original strand, 11542905 - 11543019
Alignment:
Q  168 tcctatgattcgaatacacatcaattcgcgggctccgctattatcggctacatttaaataggtttgaggttgaatcatatcatttttttctatctttcag 267  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  11542905 tcctatgattcgaatacacatcaattcgcgggctccgctattatcggctatatttaaataggtttgaggttgaatcatatcatttttttctatctttcag 11543004  T
Q  268 tcaaaaagttgaagt 282  Q
    |||||||||||||||    
T  11543005 tcaaaaagttgaagt 11543019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 246; Significance: 1e-136; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 14249173 - 14249454
Alignment:
Q  1 ttatcatcatactttattattataccattactacgttttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatgaat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||    
T  14249173 ttatcatcatactttattattataccattactacgttttagttctttacaagtacgtacagttacaaccctgatcacttcagatatttctaaagatgaat 14249272  T
Q  101 ttggtactgcttttttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactagctcctatgattcgaatacacatcaattcgcgggc 200  Q
    ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||    
T  14249273 ttgatactgcttttttgattacatcaacaacaatgtcaccaatataagcataccgttgattactagctcctatgattcgaatacagatcaattcacgggc 14249372  T
Q  201 tccgctattatcggctacatttaaataggtttgaggttgaatcatatcatttttttctatctttcagtcaaaaagttgaagt 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  14249373 tccgctattatcggctacatttaaataggtttgaggttgaatcatatcattttttactatctttcagtcaaaaagttgaagt 14249454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 822 - 875
Target Start/End: Complemental strand, 31058865 - 31058812
Alignment:
Q  822 gattttcacctcatacggctcctcgcgaataaatcgattcaaaaatatttaacc 875  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31058865 gattttcacctcatacggctcctcgcgaataaatcgattcaaaaatatttaacc 31058812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 795 - 844
Target Start/End: Complemental strand, 14543052 - 14543003
Alignment:
Q  795 ccatctctattacagaaccgtacatgagattttcacctcatacggctcct 844  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14543052 ccatctctattacagaaccgtacatgagattttcacctcatacggctcct 14543003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 883 - 917
Target Start/End: Complemental strand, 31058773 - 31058739
Alignment:
Q  883 tttaaaatagaatacaatcgcgggattttttgaca 917  Q
    |||||||||||||||||||||||||||||||||||    
T  31058773 tttaaaatagaatacaatcgcgggattttttgaca 31058739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 807 - 845
Target Start/End: Complemental strand, 4639423 - 4639385
Alignment:
Q  807 cagaaccgtacatgagattttcacctcatacggctcctc 845  Q
    ||||||||||| ||||||||||| |||||||||||||||    
T  4639423 cagaaccgtacgtgagattttcatctcatacggctcctc 4639385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1779 (Bit Score: 237; Significance: 1e-130; HSPs: 2)
Name: scaffold1779
Description:

Target: scaffold1779; HSP #1
Raw Score: 237; E-Value: 1e-130
Query Start/End: Original strand, 374 - 850
Target Start/End: Complemental strand, 524 - 48
Alignment:
Q  374 ctgaaagaatgaattgagttcgtataggcattttggatgccgctattgaaatagcctttctagctatattttctgggacgcctcccatttcataaagtat 473  Q
    |||||| ||||||||| |||  |||||||||||| || ||||||||||||||||||||||| ||||||||||| |  || || | |||||||||||||||    
T  524 ctgaaataatgaattgcgtttttataggcatttttgacgccgctattgaaatagcctttctggctatattttcggctactccactcatttcataaagtat 425  T
Q  474 tttgccgggtttaacgacagctacccaatattcgggagatccttttcccgaacccatacgcgtttcggtaggtcttactgtaacgggtttgtctggaaat 573  Q
    | |||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||| ||||||||||| ||||| |||||||||||||||    
T  424 tctgcccggtttaacgacagctacccaatactcgggagatcctttccccgaacccatacgtgtttctgtaggtcttaccgtaactggtttgtctggaaat 325  T
Q  574 atgcgtacccatattttcccacctcggcgaacatttcgtgacattgcccgtcgccctgcttctatttgtctagatgtgatccaagcgggctcaagtgcct 673  Q
    || |||||||||| ||| ||||| ||||| |||||||||| |||||| || ||||| |||||||||||||||||||| ||||||||||| |||||||| |    
T  324 atacgtacccatagttttccaccacggcgtacatttcgtgtcattgcgcggcgccccgcttctatttgtctagatgtaatccaagcgggttcaagtgctt 225  T
Q  674 gaagagcatattttccgaaggaaattgtattacctcgataggcttttcctttcattcttcctcgatgttgtttacggaatctggttcttttggggttata 773  Q
    ||||||||||| | |||||  ||||   |||||||||||| | | | || ||||||||||||| |||||||||||| |||| ||||||||||||||||||    
T  224 gaagagcatatctaccgaaacaaatccgattacctcgataagatatccccttcattcttcctctatgttgtttacgaaatcgggttcttttggggttata 125  T
Q  774 gttgatggttatttctcaattccatctctattacagaaccgtacatgagattttcacctcatacggctcctcgcgaa 850  Q
    ||||||| || ||| | ||||||||||||| |||||||| | |||||||| ||||  ||||| | ||||||||||||    
T  124 gttgatgtttgtttatgaattccatctctactacagaactggacatgagagtttcttctcatccagctcctcgcgaa 48  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1779; HSP #2
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 34 - 245
Target Start/End: Complemental strand, 873 - 662
Alignment:
Q  34 cgttttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatgaatttggtactgcttttttgattacagcaacaacaa 133  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||| || || ||||||||||||||  ||||| |||||||||| ||    
T  873 cgtttgagttctttacaagtacgtacaattacagctctgatcacttctgatctttctagaggtgtatttggtactgcttccttgatcacagcaacaataa 774  T
Q  134 tgtcaccaatataagcataccgtcgattactagctcctatgattcgaatacacatcaattcgcgggctccgctattatcggctacatttaaataggtttg 233  Q
     ||||||||||| |||||| || ||||||||||||||||||| |||||||||||||||||| ||||| ||||| ||||| |||||||| |||| ||| ||    
T  773 cgtcaccaatatgagcatatcggcgattactagctcctatgactcgaatacacatcaattctcgggccccgctgttatctgctacattcaaatgggtctg 674  T
Q  234 aggttgaatcat 245  Q
    ||||||||||||    
T  673 aggttgaatcat 662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 67 - 282
Target Start/End: Original strand, 46699127 - 46699342
Alignment:
Q  67 gccctgatcacttcagatctttctaaagatgaatttggtactgcttttttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactag 166  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  46699127 gccctgatcacttcagatctttctaaagatgaatttggtactgctttttttattacagcaacaacaatgtcaccaatataagcataccgtcgattactag 46699226  T
Q  167 ctcctatgattcgaatacacatcaattcgcgggctccgctattatcggctacatttaaataggtttgaggttgaatcatatcatttttttctatctttca 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46699227 ctcctatgattcgaatacacatcaattcgcgggctccgctattatcggctacatttaaataggtttgaggttgaatcatatcatttttttctatctttca 46699326  T
Q  267 gtcaaaaagttgaagt 282  Q
    ||||||||||||||||    
T  46699327 gtcaaaaagttgaagt 46699342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 340 - 545
Target Start/End: Complemental strand, 18375148 - 18374946
Alignment:
Q  340 catactaaagacctatttcgttctaatgattattctgaaagaatgaattgagttcgtataggcattttggatgccgctattgaaatagcctttctagcta 439  Q
    |||| |||||| |||||||||||||||  ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  18375148 catattaaagatctatttcgttctaatagttattctcaaagaataaattgagttcgtataggcattttggatgccgctattgaaatattctttctagcta 18375049  T
Q  440 tattttctgggacgcctcccatttcataaagtattttgccgggtttaacgacagctacccaatattcgggagatccttttcccgaacccatacgcgtttc 539  Q
    |||||| |||||  || ||||||||||||||||||| | | |||||||| ||| |||  ||||| || | |||| |||||| ||||||||||| ||||||    
T  18375048 tattttttggga--ccccccatttcataaagtatttagtcaggtttaacaacaactattcaata-tcagaagattcttttctcgaacccatactcgtttc 18374952  T
Q  540 ggtagg 545  Q
    ||||||    
T  18374951 ggtagg 18374946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 755 - 856
Target Start/End: Original strand, 54630176 - 54630277
Alignment:
Q  755 tggttcttttggggttatagttgatggttatttctcaattccatctctattacagaaccgtacatgagattttcacctcatacggctcctcgcgaataaa 854  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||| ||||| ||||||| ||||||||    
T  54630176 tggttcttttggtgttatagttgatagttatttctcaattccatctctattacaaaatcgtacatgagattttcaccccatacagctcctcacgaataaa 54630275  T
Q  855 tc 856  Q
    ||    
T  54630276 tc 54630277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 795 - 844
Target Start/End: Original strand, 17223707 - 17223756
Alignment:
Q  795 ccatctctattacagaaccgtacatgagattttcacctcatacggctcct 844  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17223707 ccatctctattacagaaccgtacatgagattttcacctcatacggctcct 17223756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 219 - 282
Target Start/End: Complemental strand, 18375254 - 18375193
Alignment:
Q  219 atttaaataggtttgaggttgaatcatatcatttttttctatctttcagtcaaaaagttgaagt 282  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||    
T  18375254 atttaaataggtttgaggttgaatcatat-attttttt-tatctttcaatcaaaaagttgaagt 18375193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 805 - 846
Target Start/End: Complemental strand, 13227011 - 13226970
Alignment:
Q  805 tacagaaccgtacatgagattttcacctcatacggctcctcg 846  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  13227011 tacagaaccgtacatgagattttcacctcatacggctcctcg 13226970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 1e-37; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 458 - 586
Target Start/End: Complemental strand, 10258437 - 10258309
Alignment:
Q  458 ccatttcataaagtattttgccgggtttaacgacagctacccaatattcgggagatccttttcccgaacccatacgcgtttcggtaggtcttactgtaac 557  Q
    ||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||| |||||| ||||||||| |||||| |||||||||||| ||||    
T  10258437 ccatttcataaagtattttaccggatttaatgacagctacccaatattcgggagatccgtttcccaaacccatacacgtttcagtaggtcttactctaac 10258338  T
Q  558 gggtttgtctggaaatatgcgtacccata 586  Q
      |||||||||||| ||||| ||||||||    
T  10258337 aagtttgtctggaattatgcatacccata 10258309  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 795 - 844
Target Start/End: Original strand, 19153780 - 19153829
Alignment:
Q  795 ccatctctattacagaaccgtacatgagattttcacctcatacggctcct 844  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  19153780 ccatctctattacagaaccgtacatgagattttcacctcgtacggctcct 19153829  T

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Target: chr7 (Bit Score: 54; Significance: 2e-21; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 219 - 280
Target Start/End: Original strand, 46634212 - 46634273
Alignment:
Q  219 atttaaataggtttgaggttgaatcatatcatttttttctatctttcagtcaaaaagttgaa 280  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  46634212 atttaagtaggtttgaggttgaatcatatcatttttttctatctttcaatcaaaaagttgaa 46634273  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 341 - 477
Target Start/End: Original strand, 46634322 - 46634463
Alignment:
Q  341 atactaaagacctatttcgttctaatgattattctgaaagaatgaattgagttcgtataggcattttggat-----gccgctattgaaatagcctttcta 435  Q
    ||||||||||| ||||| |||||||| ||| ||||||||||||| |||  ||| |||||||||| ||||||     || |||||||||||||| ||||||    
T  46634322 atactaaagacatatttggttctaattattcttctgaaagaatg-attaggtttgtataggcatcttggatgtcgcgctgctattgaaatagcttttcta 46634420  T
Q  436 gctata-ttttctgggacgcctcccatttcataaagtattttg 477  Q
    |||||| |||| ||| |  |||||||||||||||| |||||||    
T  46634421 gctatatttttttggaatccctcccatttcataaaatattttg 46634463  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 795 - 844
Target Start/End: Complemental strand, 6930487 - 6930438
Alignment:
Q  795 ccatctctattacagaaccgtacatgagattttcacctcatacggctcct 844  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  6930487 ccatctctaatacagaaccgtacatgagattttcacctcatacggctcct 6930438  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 805 - 846
Target Start/End: Complemental strand, 1399923 - 1399882
Alignment:
Q  805 tacagaaccgtacatgagattttcacctcatacggctcctcg 846  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  1399923 tacagaaccgtacatgagattttcacctcatacgactcctcg 1399882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 805 - 846
Target Start/End: Complemental strand, 18961112 - 18961072
Alignment:
Q  805 tacagaaccgtacatgagattttcacctcatacggctcctcg 846  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  18961112 tacagaaccgtacatgagattttcacctcata-ggctcctcg 18961072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 805 - 846
Target Start/End: Complemental strand, 18993073 - 18993033
Alignment:
Q  805 tacagaaccgtacatgagattttcacctcatacggctcctcg 846  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  18993073 tacagaaccgtacatgagattttcacctcata-ggctcctcg 18993033  T

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Target: scaffold0008 (Bit Score: 46; Significance: 9e-17; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 795 - 844
Target Start/End: Original strand, 265168 - 265217
Alignment:
Q  795 ccatctctattacagaaccgtacatgagattttcacctcatacggctcct 844  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  265168 ccatctctattacagaaccgtacataagattttcacctcatacggctcct 265217  T

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Target: scaffold0625 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0625
Description:

Target: scaffold0625; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 805 - 846
Target Start/End: Original strand, 8623 - 8664
Alignment:
Q  805 tacagaaccgtacatgagattttcacctcatacggctcctcg 846  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  8623 tacagaaccgtacatgagattttcacctcatacggctcctcg 8664  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 592 - 668
Target Start/End: Original strand, 5478421 - 5478497
Alignment:
Q  592 ccacctcggcgaacatttcgtgacattgcccgtcgccctgcttctatttgtctagatgtgatccaagcgggctcaag 668  Q
    |||||||| ||||||||||||||||||  ||||| ||    ||||||||||||||||||||||||||| ||||||||    
T  5478421 ccacctcgacgaacatttcgtgacattatccgtcacctcatttctatttgtctagatgtgatccaagcaggctcaag 5478497  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 807 - 845
Target Start/End: Original strand, 31265991 - 31266029
Alignment:
Q  807 cagaaccgtacatgagattttcacctcatacggctcctc 845  Q
    ||||||||||| ||||||||||| |||||||||||||||    
T  31265991 cagaaccgtacgtgagattttcatctcatacggctcctc 31266029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 807 - 845
Target Start/End: Original strand, 8693 - 8731
Alignment:
Q  807 cagaaccgtacatgagattttcacctcatacggctcctc 845  Q
    ||||||||||| ||||||||||| |||||||||||||||    
T  8693 cagaaccgtacgtgagattttcatctcatacggctcctc 8731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 883 - 917
Target Start/End: Original strand, 13377 - 13411
Alignment:
Q  883 tttaaaatagaatacaatcgcgggattttttgaca 917  Q
    |||||||||||||||||||||| ||||||||||||    
T  13377 tttaaaatagaatacaatcgcgagattttttgaca 13411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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