View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13630_high_6 (Length: 608)
Name: NF13630_high_6
Description: NF13630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13630_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 544; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 20 - 579
Target Start/End: Complemental strand, 27357701 - 27357142
Alignment:
| Q |
20 |
gacatcatcctctccaacaaaaaccacccacaagacgaggatgttttcatcaacgacgacaagcctcgtgaagagtgcggcgttgttggaatctatggcg |
119 |
Q |
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| T |
27357701 |
gacatcatcctctccaacaaaaaccacccacaagacgaggttgttttcatcaacgacgacaagcctcgtgaagagtgcggcgttgttggtatctacggcg |
27357602 |
T |
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| Q |
120 |
actcagaagcctcccgtctctgctacttagccctccacgctctccaacaccgcggccaagaaggcgctggaatcgtcaccgttaacaacaacgttcttca |
219 |
Q |
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| T |
27357601 |
actcagaagcctcccgtctctgctacttagccctccacgctctccaacaccgcggccaagaaggcgctggaatcgtcaccgttaacaacaacgttcttca |
27357502 |
T |
|
| Q |
220 |
atccatcaccggtgttggtcttgtctccgatgtcttcaacgaaaccaaactcgatcagttacccggaagcttagccatcggccatgttcgttattctact |
319 |
Q |
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| T |
27357501 |
atccatcaccggtgttggtcttgtctccgatgtcttcaacgaaaccaaactcgatcagttacccggaagcttagccatcggccatgttcgttattctact |
27357402 |
T |
|
| Q |
320 |
gctggacagtccatgttgaagaatgttcaaccttttgttgctgggtaccgttttggttctgttggtgttgctcataacggtaatttagttaattatcgta |
419 |
Q |
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| T |
27357401 |
gctggacagtccatgttgaagaatgttcaaccttttgttgctgggtaccgttttggttctgttggtgttgctcataacggtaatttagttaattatcgta |
27357302 |
T |
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| Q |
420 |
ctttaagagctaagcttgaagaaaaaggttctatttttaacactacttctgatactgaagttgttcttcatttgattgctacttcaaagcatagaccttt |
519 |
Q |
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| T |
27357301 |
ctttaagagctaagcttgaagaaaaaggttcgatttttaacactacttctgatactgaagttgttcttcatttgattgctacttcaaagcatagaccttt |
27357202 |
T |
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| Q |
520 |
tattttaagaattgttgatgcatgtgagaagcttgaaggtgcttattcgattgtgtttgt |
579 |
Q |
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| T |
27357201 |
tattttaagaattgttgatgcatgtgagaagcttgaaggtgcttattcgattgtgtttgt |
27357142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 245 - 579
Target Start/End: Complemental strand, 55061293 - 55060958
Alignment:
| Q |
245 |
tccgatgtcttcaacgaaaccaaactcgatcagttacccggaagcttagccatcggccatgttcgttattctactgctggacagtccatgttgaagaatg |
344 |
Q |
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| T |
55061293 |
tccgaagttttcaacgacacaaaactccgtcaattacctggaaacttagccattggtcacatccgttattcaactgcaggccaatccatgctcaaaaacg |
55061194 |
T |
|
| Q |
345 |
ttcaaccttttgttgctgggtaccgttttggttctgttggtgttgctcataacggtaatttagttaattatcgtactttaagagctaagcttgaagaaaa |
444 |
Q |
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| T |
55061193 |
ttcaaccttttgttgcaggttaccgttttggttccgttggtgttgctcataatggtaacttcgtcaattaccgttccttgagaaatgaacttgaagaatc |
55061094 |
T |
|
| Q |
445 |
aggttctatttttaacactacttctgatactgaagttgttcttcatttgattgctacttcaaagcatagacctttt-attttaagaattgttgatgcatg |
543 |
Q |
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| T |
55061093 |
tggttcaattttcaacactacttctgatactgaagttttgcttcatcttattgcaacttcaaatcatagacctttttatagcgagaattgttgaagcgtg |
55060994 |
T |
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| Q |
544 |
tgagaagcttgaaggtgcttattcgattgtgtttgt |
579 |
Q |
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||| || || ||||||||||||| ||||||||||| |
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| T |
55060993 |
tgaaaaagttaaaggtgcttattcaattgtgtttgt |
55060958 |
T |
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