View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13630_high_7 (Length: 543)
Name: NF13630_high_7
Description: NF13630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13630_high_7 |
 | |
|
| [»] chr2 (6 HSPs) |
| |
|
| [»] chr4 (5 HSPs) |
| |
|
| [»] scaffold0351 (1 HSPs) |
| | |
|
| [»] scaffold0036 (1 HSPs) |
| | |
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| [»] scaffold0750 (1 HSPs) |
| | |
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| [»] scaffold0124 (1 HSPs) |
| | |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 46411838 - 46412102
Alignment:
| Q |
1 |
aacaacgtgaagagaatttttcataacatctctatcaaaaacaaaaacaatgtttatatgagtcttcttacttgtatattgttcaatcttcactttttca |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
46411838 |
aacaacgtgaagagaatttgtcataacatctctatcaaaaacaaaaacaatgtttatatgagtcttcttatttgtatattgttcaatctccactttttca |
46411937 |
T |
|
| Q |
101 |
aacaatgcgagacttctaactcatattttaccctacaacataaatgtgaatatatgtataaattacacttgaaccgctagttgagcagtaaaaacctaaa |
200 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46411938 |
aacaatgtgagacttctaactcatagtttaccctacaacataaatgtgaatatatgtataaattacacttgaaccgctagttgagcagtaaaaacctaaa |
46412037 |
T |
|
| Q |
201 |
cttgtaacttcaaaaaagtttaaacttcatgttaaacatttgtaaaatagttataagtgtcgctt |
265 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
46412038 |
cttgtaacttcaaaaaagtttaaacttcttgttaaacatttgtaaaatagttataagtgtcgctt |
46412102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 262 - 543
Target Start/End: Complemental strand, 39694623 - 39694342
Alignment:
| Q |
262 |
gcttatgctttgcttactaatcatggggagcagcaggatagcctttgtgaggatttggtttggcacaaacaggttcctcttgaggtgtctatttttgctt |
361 |
Q |
| |
|
||||||||||| |||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
39694623 |
gcttatgctttacttacttctcaagaggagcagcaggatagcctttgtgaggatttggtttggcacaaacaggttcctcttaaggtgtctatttttgctt |
39694524 |
T |
|
| Q |
362 |
ggagattgattcgagacagacttcctaccaagtccaagttagcttcccgtggtattttgagttcagaggcatgtttatgtgtgtcagggtgtggtgaatt |
461 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
39694523 |
ggagattgattcgagacagactccctaccaagtccaatttagcttcccgtggtattttgagttcagaggcatgtttatgtgtgtcagggtgtggtttatt |
39694424 |
T |
|
| Q |
462 |
ggaagacgctcgacatttatttttgtcttgcagnnnnnnnggtttattatggccgctggtgagatcgtggataggttttgat |
543 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
39694423 |
ggaagacgctcgacatttatttttgtcttgcagattttttggtttattatggccgctggtgagatcttggataggttttgat |
39694342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 262 - 494
Target Start/End: Original strand, 45165547 - 45165779
Alignment:
| Q |
262 |
gcttatgctttgcttactaatcatggggagcagcaggatagcctttgtgaggatttggtttggcacaaacaggttcctcttgaggtgtctatttttgctt |
361 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||||| |||||||| |||||||||||||||||| ||||||| ||| |||||| ||||||||||| |
|
|
| T |
45165547 |
gcttatgctttgcttactaatcaagaggagcagcaggatagtctttgtgaagatttggtttggcacaaagaggttccccttaaggtgtttatttttgctt |
45165646 |
T |
|
| Q |
362 |
ggagattgattcgagacagacttcctaccaagtccaagttagcttcccgtggtattttgagttcagaggcatgtttatgtgtgtcagggtgtggtgaatt |
461 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||| || ||||| | |||| |||||||| ||||||||||||||||||||||| |||||||||| ||| |
|
|
| T |
45165647 |
ggagattgattcgagatagacttcctacaaagtctaatttagcatatcgtgatattttgaattcagaggcatgtttatgtgtgttagggtgtggtttatt |
45165746 |
T |
|
| Q |
462 |
ggaagacgctcgacatttatttttgtcttgcag |
494 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |
|
|
| T |
45165747 |
ggaagatgctcgacatttatttttgtcttgcag |
45165779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 313 - 494
Target Start/End: Original strand, 6343679 - 6343860
Alignment:
| Q |
313 |
gatttggtttggcacaaacaggttcctcttgaggtgtctatttttgcttggagattgattcgagacagacttcctaccaagtccaagttagcttcccgtg |
412 |
Q |
| |
|
|||||||||||||| || || ||||| || |||||||||||||||||||| | ||| |||| || ||||||| || ||||| || ||||| || ||| |
|
|
| T |
6343679 |
gatttggtttggcataagcatgttccgattaaggtgtctatttttgcttggcggttgcttcgtgatcgacttcccactaagtctaacttagcaacctgtg |
6343778 |
T |
|
| Q |
413 |
gtattttgagttcagaggcatgtttatgtgtgtcagggtgtggtgaattggaagacgctcgacatttatttttgtcttgcag |
494 |
Q |
| |
|
|||||||| || ||| ||||||||||| ||||||||||| ||||||| || |||||| |||||||||||||||| |
|
|
| T |
6343779 |
gtattttggattttcaggtgtgtttatgtgtatcagggtgtggcttgatggaagatgcacgacatctatttttgtcttgcag |
6343860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 262 - 543
Target Start/End: Original strand, 2207810 - 2208091
Alignment:
| Q |
262 |
gcttatgctttgcttactaatcatggggagcagcaggatagcctttgtgaggatttggtttggcacaaacaggttcctcttgaggtgtctatttttgctt |
361 |
Q |
| |
|
||||||||||| ||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
2207810 |
gcttatgctttacttactactcaagaggagcagcaggatagcctttgtgaggatttggtttggcacaaacaggttcctcttaaggtgtctatttttgctt |
2207909 |
T |
|
| Q |
362 |
ggagattgattcgagacagacttcctaccaagtccaagttagcttcccgtggtattttgagttcagaggcatgtttatgtgtgtcagggtgtggtgaatt |
461 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
2207910 |
ggagattgattcgagacagactccctaccaagtccaatttagcttcccgtggtattttgagttcagaggcatgtttatgtgtgtcagggtgtggattatt |
2208009 |
T |
|
| Q |
462 |
ggaagacgctcgacatttatttttgtcttgcagnnnnnnnggtttattatggccgctggtgagatcgtggataggttttgat |
543 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
2208010 |
ggaagacgctcgacatttatttttgtcttgcagattttttggtttattatggccgctggtgagatcttggataggttttgat |
2208091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 265 - 494
Target Start/End: Original strand, 6727768 - 6727997
Alignment:
| Q |
265 |
tatgctttgcttactaatcatggggagcagcaggatagcctttgtgaggatttggtttggcacaaacaggttcctcttgaggtgtctatttttgcttgga |
364 |
Q |
| |
|
|||||||||||||||||||| | |||||||||| || | |||||||| || ||||||||||||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
6727768 |
tatgctttgcttactaatcaggaggagcagcagaatggtctttgtgaagaattggtttggcacaaacaggttccccttaaggtgtctatttttgcttgga |
6727867 |
T |
|
| Q |
365 |
gattgattcgagacagacttcctaccaagtccaagttagcttcccgtggtattttgagttcagaggcatgtttatgtgtgtcagggtgtggtgaattgga |
464 |
Q |
| |
|
| ||||||||||| ||||||||||| ||||| || ||||| | |||||||| |||| |||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
6727868 |
ggttgattcgagatagacttcctacaaagtctaatttagcatatcgtggtatcttgaattcagaggcatgtttatgtgtgtcagggtgtggtttattgga |
6727967 |
T |
|
| Q |
465 |
agacgctcgacatttatttttgtcttgcag |
494 |
Q |
| |
|
||| |||||||||||||||||||||||||| |
|
|
| T |
6727968 |
agatgctcgacatttatttttgtcttgcag |
6727997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 265 - 494
Target Start/End: Complemental strand, 13415832 - 13415603
Alignment:
| Q |
265 |
tatgctttgcttactaatcatggggagcagcaggatagcctttgtgaggatttggtttggcacaaacaggttcctcttgaggtgtctatttttgcttgga |
364 |
Q |
| |
|
|||||| ||||||| ||||| | | |||||||||| | ||||| || || ||||||||||||||||| ||||| ||| |||||||||||||| |||||| |
|
|
| T |
13415832 |
tatgctatgcttaccaatcaggaagtgcagcaggatggtctttgcgaagaattggtttggcacaaacatgttccccttaaggtgtctattttttcttgga |
13415733 |
T |
|
| Q |
365 |
gattgattcgagacagacttcctaccaagtccaagttagcttcccgtggtattttgagttcagaggcatgtttatgtgtgtcagggtgtggtgaattgga |
464 |
Q |
| |
|
| ||||||||||| ||||||||||| | ||| || ||||| | ||||||||||||| |||||||||||| |||||||||||| | |||||| |||| |
|
|
| T |
13415732 |
ggttgattcgagatagacttcctacaatgtctaatttagcatatcgtggtattttgaattcagaggcatgcttatgtgtgtcaagatgtggtttcgtgga |
13415633 |
T |
|
| Q |
465 |
agacgctcgacatttatttttgtcttgcag |
494 |
Q |
| |
|
||| || ||||||||||||||||||||||| |
|
|
| T |
13415632 |
agatgcacgacatttatttttgtcttgcag |
13415603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 291 - 494
Target Start/End: Original strand, 27951436 - 27951638
Alignment:
| Q |
291 |
gcagcaggatagcctttgtgaggatttggtttggcacaaacaggttcctcttgaggtgtctatttttgcttggagattgattcgagacagacttcctacc |
390 |
Q |
| |
|
|||||||||| | ||||| || || ||||||||||||||||| ||||| ||| |||||| ||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
27951436 |
gcagcaggatggtctttgcgaagaattggtttggcacaaacatgttccccttaaggtgtttatttttgcttggaggctgattcgagacagacttcctaca |
27951535 |
T |
|
| Q |
391 |
aagtccaagttagcttcccgtggtattttgagttcagaggcatgtttatgtgtgtcagggtgtggtgaattggaagacgctcgacatttatttttgtctt |
490 |
Q |
| |
|
| ||| || ||||| | |||||||| |||| ||||||||||| ||||||||||||||| |||||| ||||||| || ||||||||||||||||||| |
|
|
| T |
27951536 |
atgtctaatttagcatatcgtggtatattgaattcagaggcat-tttatgtgtgtcaggatgtggtttcgtggaagatgcacgacatttatttttgtctt |
27951634 |
T |
|
| Q |
491 |
gcag |
494 |
Q |
| |
|
|||| |
|
|
| T |
27951635 |
gcag |
27951638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 380
Target Start/End: Complemental strand, 39073237 - 39073177
Alignment:
| Q |
320 |
tttggcacaaacaggttcctcttga-ggtgtctatttttgcttggagattgattcgagacag |
380 |
Q |
| |
|
|||||||||| |||||||| ||||| |||||||||| |||||||||||||| ||| |||||| |
|
|
| T |
39073237 |
tttggcacaagcaggttcc-cttgaaggtgtctattcttgcttggagattgcttcaagacag |
39073177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 315 - 371
Target Start/End: Original strand, 43724183 - 43724239
Alignment:
| Q |
315 |
tttggtttggcacaaacaggttcctcttgaggtgtctatttttgcttggagattgat |
371 |
Q |
| |
|
||||||||||||||| || ||||| ||| |||| || |||||||||||||| ||||| |
|
|
| T |
43724183 |
tttggtttggcacaatcatgttccgcttaaggtctcaatttttgcttggaggttgat |
43724239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 149; Significance: 2e-78; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 262 - 543
Target Start/End: Original strand, 19163165 - 19163445
Alignment:
| Q |
262 |
gcttatgctttgcttactaatcatggggagcagcaggatagcctttgtgaggatttggtttggcacaaacaggttcctcttgaggtgtctatttttgctt |
361 |
Q |
| |
|
|||||||||||||||||| |||| | ||||||||||||| | |||||||| |||||||||||||||||||||||||| ||| || ||||||||||||||| |
|
|
| T |
19163165 |
gcttatgctttgcttactgatcaagaggagcagcaggatggtctttgtgaagatttggtttggcacaaacaggttccccttaag-tgtctatttttgctt |
19163263 |
T |
|
| Q |
362 |
ggagattgattcgagacagacttcctaccaagtccaagttagcttcccgtggtattttgagttcagaggcatgtttatgtgtgtcagggtgtggtgaatt |
461 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||| || ||||| | ||||||||||||| ||||||||| ||||||||||||||||||||||||| || |
|
|
| T |
19163264 |
ggagattgattcgagatagacttcctacaaagtctaatttagcatatcgtggtattttgaattcagaggcttgtttatgtgtgtcagggtgtggtgtttt |
19163363 |
T |
|
| Q |
462 |
ggaagacgctcgacatttatttttgtcttgcagnnnnnnnggtttattatggccgctggtgagatcgtggataggttttgat |
543 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||| |||||| || |||||||||| |||||||| |||||| |
|
|
| T |
19163364 |
ggaagatgctcgacatttatttttgtcttgcagcttctttggttctttatggtcgttggtgagatcctggataggctttgat |
19163445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 265 - 494
Target Start/End: Complemental strand, 40688216 - 40687987
Alignment:
| Q |
265 |
tatgctttgcttactaatcatggggagcagcaggatagcctttgtgaggatttggtttggcacaaacaggttcctcttgaggtgtctatttttgcttgga |
364 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |||||||| || ||||||||||||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
40688216 |
tatgctttgcttactaatcaaaaggagcagcaggatagtctttgtgaagaattggtttggcacaaacaggttccccttaaggtgtctatttttgcttgga |
40688117 |
T |
|
| Q |
365 |
gattgattcgagacagacttcctaccaagtccaagttagcttcccgtggtattttgagttcagaggcatgtttatgtgtgtcagggtgtggtgaattgga |
464 |
Q |
| |
|
| ||||||||||| ||||||||||| ||||| || ||||| | |||||||| |||| ||||||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
40688116 |
ggttgattcgagatagacttcctacaaagtctaatttagcatatcgtggtatattgaattcagaggcatgtttatgtgtgtcaggatgtggtttattgga |
40688017 |
T |
|
| Q |
465 |
agacgctcgacatttatttttgtcttgcag |
494 |
Q |
| |
|
||| |||||||||||||||||||||||||| |
|
|
| T |
40688016 |
agatgctcgacatttatttttgtcttgcag |
40687987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 318 - 494
Target Start/End: Original strand, 22877509 - 22877685
Alignment:
| Q |
318 |
ggtttggcacaaacaggttcctcttgaggtgtctatttttgcttggagattgattcgagacagacttcctaccaagtccaagttagcttcccgtggtatt |
417 |
Q |
| |
|
||||||||||||||| ||| | ||| |||||||||||||||||||||| ||||||||||| ||||||||||| ||||| || ||||| | |||||||| |
|
|
| T |
22877509 |
ggtttggcacaaacatgtttcccttaaggtgtctatttttgcttggaggttgattcgagatagacttcctacaaagtctaatttagcatatcgtggtatc |
22877608 |
T |
|
| Q |
418 |
ttgagttcagaggcatgtttatgtgtgtcagggtgtggtgaattggaagacgctcgacatttatttttgtcttgcag |
494 |
Q |
| |
|
|||| |||||||||||| ||||||||| |||| |||||| ||||||| || ||||||||||||||||||||||| |
|
|
| T |
22877609 |
ttgaattcagaggcatgcttatgtgtgacaggatgtggtttcgtggaagatgcacgacatttatttttgtcttgcag |
22877685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 313 - 494
Target Start/End: Complemental strand, 54684711 - 54684530
Alignment:
| Q |
313 |
gatttggtttggcacaaacaggttcctcttgaggtgtctatttttgcttggagattgattcgagacagacttcctaccaagtccaagttagcttcccgtg |
412 |
Q |
| |
|
|||||| ||||||| || || ||||| ||| ||||||||||||| |||||| | ||| |||| || ||||||| || ||||| || ||||| |||||| |
|
|
| T |
54684711 |
gatttgatttggcataagcatgttccgcttaaggtgtctattttcgcttggcggttgcttcgtgatcgacttcccactaagtctaacttagcaacccgtg |
54684612 |
T |
|
| Q |
413 |
gtattttgagttcagaggcatgtttatgtgtgtcagggtgtggtgaattggaagacgctcgacatttatttttgtcttgcag |
494 |
Q |
| |
|
|||| ||| || | |||| ||||||||||||||||| ||||| |||||||| || || ||| ||||| |||||||||| |
|
|
| T |
54684611 |
gtatcttggatttacaggcgtgtttatgtgtgtcaggttgtggactgttggaagatgcacgccatctatttctgtcttgcag |
54684530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 410 - 494
Target Start/End: Complemental strand, 17874899 - 17874815
Alignment:
| Q |
410 |
gtggtattttgagttcagaggcatgtttatgtgtgtcagggtgtggtgaattggaagacgctcgacatttatttttgtcttgcag |
494 |
Q |
| |
|
||||||| |||| ||||||||| || |||||||||||||| |||||| ||||||| ||||| |||||||||||||| ||||| |
|
|
| T |
17874899 |
gtggtatcttgaattcagaggcgtgcttatgtgtgtcaggatgtggtttcgtggaagatgctcgtcatttatttttgtcgtgcag |
17874815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 141; Significance: 1e-73; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 262 - 490
Target Start/End: Original strand, 4310822 - 4311050
Alignment:
| Q |
262 |
gcttatgctttgcttactaatcatggggagcagcaggatagcctttgtgaggatttggtttggcacaaacaggttcctcttgaggtgtctatttttgctt |
361 |
Q |
| |
|
||||||||||||||||||||||| | |||| |||||||||| |||||| | || ||||||||||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
4310822 |
gcttatgctttgcttactaatcaagaggaggagcaggatagtctttgtaaagaattggtttggcacaaacaggttccccttaaggtgtctatttttgctt |
4310921 |
T |
|
| Q |
362 |
ggagattgattcgagacagacttcctaccaagtccaagttagcttcccgtggtattttgagttcagaggcatgtttatgtgtgtcagggtgtggtgaatt |
461 |
Q |
| |
|
||||||||||| |||| ||||||||||| ||||| || ||||| | ||||||||||||| ||||||||||||||||||||||| |||||||||| ||| |
|
|
| T |
4310922 |
ggagattgatttgagatagacttcctacaaagtctaatttagcatatcgtggtattttgaattcagaggcatgtttatgtgtgttagggtgtggtttatt |
4311021 |
T |
|
| Q |
462 |
ggaagacgctcgacatttatttttgtctt |
490 |
Q |
| |
|
|||||| |||||||||||||||||||||| |
|
|
| T |
4311022 |
ggaagatgctcgacatttatttttgtctt |
4311050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 411 - 494
Target Start/End: Original strand, 8564794 - 8564877
Alignment:
| Q |
411 |
tggtattttgagttcagaggcatgtttatgtgtgtcagggtgtggtgaattggaagacgctcgacatttatttttgtcttgcag |
494 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
8564794 |
tggtattttgaattcagaggcatgttaatgtgtgtcagggtgtggttttttggaagatgctcgacatttatttttgtcttgcag |
8564877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 365
Target Start/End: Complemental strand, 35029319 - 35029271
Alignment:
| Q |
317 |
tggtttggcacaaacaggttcctcttgaggtgtctatttttgcttggag |
365 |
Q |
| |
|
|||||||||| ||||| ||||| ||| |||| ||||||||||||||||| |
|
|
| T |
35029319 |
tggtttggcataaacatgttccacttaaggtttctatttttgcttggag |
35029271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0351 (Bit Score: 133; Significance: 7e-69; HSPs: 1)
Name: scaffold0351
Description:
Target: scaffold0351; HSP #1
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 262 - 494
Target Start/End: Original strand, 12980 - 13212
Alignment:
| Q |
262 |
gcttatgctttgcttactaatcatggggagcagcaggatagcctttgtgaggatttggtttggcacaaacaggttcctcttgaggtgtctatttttgctt |
361 |
Q |
| |
|
|||||||||||||| |||||||| | |||||| |||||||| |||| ||| ||||||||||||||||||||||| || ||| |||| |||||||| |||| |
|
|
| T |
12980 |
gcttatgctttgctaactaatcaagaggagcaacaggatagtctttttgacgatttggtttggcacaaacaggtcccccttaaggtctctattttcgctt |
13079 |
T |
|
| Q |
362 |
ggagattgattcgagacagacttcctaccaagtccaagttagcttcccgtggtattttgagttcagaggcatgtttatgtgtgtcagggtgtggtgaatt |
461 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||| || ||||| | ||||||||||||| | |||||||||||||||||||||||||||||||| || |
|
|
| T |
13080 |
ggagattgattcgagatagacttcctacaaagtctaatttagcatatcgtggtattttgaatacagaggcatgtttatgtgtgtcagggtgtggtttttt |
13179 |
T |
|
| Q |
462 |
ggaagacgctcgacatttatttttgtcttgcag |
494 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |
|
|
| T |
13180 |
ggaagatgctcgacatttatttttgtcttgcag |
13212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 125; Significance: 4e-64; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 261 - 493
Target Start/End: Complemental strand, 36255932 - 36255700
Alignment:
| Q |
261 |
cgcttatgctttgcttactaatcatggggagcagcaggatagcctttgtgaggatttggtttggcacaaacaggttcctcttgaggtgtctatttttgct |
360 |
Q |
| |
|
|||||||||||||||||||||||| | |||| || ||||| |||||||| || ||||||||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
36255932 |
cgcttatgctttgcttactaatcaagaggagtctcaagatagtctttgtgaagaattggtttggcacaaacaggttccccttaaggtgtctatttttgct |
36255833 |
T |
|
| Q |
361 |
tggagattgattcgagacagacttcctaccaagtccaagttagcttcccgtggtattttgagttcagaggcatgtttatgtgtgtcagggtgtggtgaat |
460 |
Q |
| |
|
||||||||||||||||| ||||| ||||| ||||| || ||||| | ||||| ||||||| ||||||||| |||||||||||||||||||||||| | |
|
|
| T |
36255832 |
tggagattgattcgagatagactccctacaaagtctaatttagcatatcgtgggattttgaattcagaggcttgtttatgtgtgtcagggtgtggttttt |
36255733 |
T |
|
| Q |
461 |
tggaagacgctcgacatttatttttgtcttgca |
493 |
Q |
| |
|
|| ||||||||||||||||||||||||| |||| |
|
|
| T |
36255732 |
tgaaagacgctcgacatttatttttgtcctgca |
36255700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 265 - 493
Target Start/End: Complemental strand, 35837358 - 35837130
Alignment:
| Q |
265 |
tatgctttgcttactaatcatggggagcagcaggatagcctttgtgaggatttggtttggcacaaacaggttcctcttgaggtgtctatttttgcttgga |
364 |
Q |
| |
|
|||||| ||||||||||||| | |||||||||||| ||||| || || ||||||||||||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
35837358 |
tatgctatgcttactaatcaggaattgcagcaggatagactttgcgatgaattggtttggcacaaacaggttccgcttaaggtgtctatttttgcttgga |
35837259 |
T |
|
| Q |
365 |
gattgattcgagacagacttcctaccaagtccaagttagcttcccgtggtattttgagttcagaggcatgtttatgtgtgtcagggtgtggtgaattgga |
464 |
Q |
| |
|
| |||||||| || |||||||||| ||||| || ||||| | |||||||| ||| ||||||||| || ||||||||||||||||||||| |||| |
|
|
| T |
35837258 |
ggttgattcgcgatcgacttcctacaaagtctaatttagcatatcgtggtatcttggattcagaggcgtgcttatgtgtgtcagggtgtggtcttgtgga |
35837159 |
T |
|
| Q |
465 |
agacgctcgacatttatttttgtcttgca |
493 |
Q |
| |
|
||| |||| ||||| |||||||| |||| |
|
|
| T |
35837158 |
agatgctcaccatttctttttgtcctgca |
35837130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 291 - 494
Target Start/End: Original strand, 44826 - 45028
Alignment:
| Q |
291 |
gcagcaggatagcctttgtgaggatttggtttggcacaaacaggttcctcttgaggtgtctatttttgcttggagattgattcgagacagacttcctacc |
390 |
Q |
| |
|
|||||||||| | |||| || || ||||||||||||||||| ||||| ||| |||||| ||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
44826 |
gcagcaggatggtatttgcgaagaattggtttggcacaaacatgttccccttaaggtgtttatttttgcttggaggctgattcgagacagacttcctaca |
44925 |
T |
|
| Q |
391 |
aagtccaagttagcttcccgtggtattttgagttcagaggcatgtttatgtgtgtcagggtgtggtgaattggaagacgctcgacatttatttttgtctt |
490 |
Q |
| |
|
| ||| || ||||| | |||||||| |||| ||||||||||| ||||||||||||||| |||||| ||||||| || ||||||||||||||||||| |
|
|
| T |
44926 |
atgtctaatttagcatatcgtggtatattgaattcagaggcat-tttatgtgtgtcaggatgtggtttcgtggaagatgcacgacatttatttttgtctt |
45024 |
T |
|
| Q |
491 |
gcag |
494 |
Q |
| |
|
|||| |
|
|
| T |
45025 |
gcag |
45028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 4e-36; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 265 - 494
Target Start/End: Complemental strand, 8130100 - 8129871
Alignment:
| Q |
265 |
tatgctttgcttactaatcatggggagcagcaggatagcctttgtgaggatttggtttggcacaaacaggttcctcttgaggtgtctatttttgcttgga |
364 |
Q |
| |
|
|||||| |||||| |||||| | | |||||||||| | ||||| || || ||||||||||||||||| ||||| || ||||||||||||||||||||| |
|
|
| T |
8130100 |
tatgctatgcttattaatcaggaagtgcagcaggatggtctttgcgaagaattggtttggcacaaacatgttcccctcaaggtgtctatttttgcttgga |
8130001 |
T |
|
| Q |
365 |
gattgattcgagacagacttcctaccaagtccaagttagcttcccgtggtattttgagttcagaggcatgtttatgtgtgtcagggtgtggtgaattgga |
464 |
Q |
| |
|
| ||||||||||| ||||||||||| | ||| || ||| | |||||||| |||| |||||||||||| |||||||| |||| |||||| |||| |
|
|
| T |
8130000 |
ggttgattcgagatagacttcctacaatgtctaatttaatatttcgtggtatcttgaattcagaggcatgcttatgtgtaacaggttgtggtttcgtgga |
8129901 |
T |
|
| Q |
465 |
agacgctcgacatttatttttgtcttgcag |
494 |
Q |
| |
|
||| || ||||||||||||||||||||||| |
|
|
| T |
8129900 |
agatgcacgacatttatttttgtcttgcag |
8129871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 291 - 494
Target Start/End: Complemental strand, 6986025 - 6985822
Alignment:
| Q |
291 |
gcagcaggatagcctttgtgaggatttggtttggcacaaacaggttcctcttgaggtgtctatttttgcttggagattgattcgagacagacttcctacc |
390 |
Q |
| |
|
|||| ||||| | ||||| || || ||||||||||||||||| ||||| || |||||||||||||||||||||| ||||||||||| ||||||| ||| |
|
|
| T |
6986025 |
gcagtaggatggtctttgcgaagaattggtttggcacaaacatgttcccctcaaggtgtctatttttgcttggaggttgattcgagatagacttcataca |
6985926 |
T |
|
| Q |
391 |
aagtccaagttagcttcccgtggtattttgagttcagaggcatgtttatgtgtgtcagggtgtggtgaattggaagacgctcgacatttatttttgtctt |
490 |
Q |
| |
|
| ||| || ||||| | | |||||| |||| |||||||||||| || |||||| |||| |||||| ||||||| || ||||||||||||||||||| |
|
|
| T |
6985925 |
atgtctaatttagcatatcatggtatcttgaattcagaggcatgcttttgtgtgacaggatgtggtttcgtggaagatgcacgacatttatttttgtctt |
6985826 |
T |
|
| Q |
491 |
gcag |
494 |
Q |
| |
|
|||| |
|
|
| T |
6985825 |
gcag |
6985822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0750 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: scaffold0750
Description:
Target: scaffold0750; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 265 - 491
Target Start/End: Complemental strand, 6200 - 5974
Alignment:
| Q |
265 |
tatgctttgcttactaatcatggggagcagcaggatagcctttgtgaggatttggtttggcacaaacaggttcctcttgaggtgtctatttttgcttgga |
364 |
Q |
| |
|
|||||| |||||| |||||| | | |||||||||| | ||||| || || ||||||||||||||||| ||||| || ||||||||||||||||||||| |
|
|
| T |
6200 |
tatgctatgcttattaatcaggaagtgcagcaggatggtctttgcgaagaattggtttggcacaaacatgttcccctcaaggtgtctatttttgcttgga |
6101 |
T |
|
| Q |
365 |
gattgattcgagacagacttcctaccaagtccaagttagcttcccgtggtattttgagttcagaggcatgtttatgtgtgtcagggtgtggtgaattgga |
464 |
Q |
| |
|
| ||||||||||| ||||||||||| | ||| || ||||| | |||||||| |||| |||| ||||||| ||||||||| || | | |||| |||| |
|
|
| T |
6100 |
ggttgattcgagatagacttcctacaatgtctaatttagcatttcgtggtatcttgaattcaaaggcatgcttatgtgtgacaagttctggttttgtgga |
6001 |
T |
|
| Q |
465 |
agacgctcgacatttatttttgtcttg |
491 |
Q |
| |
|
||| || |||||||||||||||||||| |
|
|
| T |
6000 |
agatgcacgacatttatttttgtcttg |
5974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0124 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: scaffold0124
Description:
Target: scaffold0124; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 265 - 491
Target Start/End: Complemental strand, 22562 - 22336
Alignment:
| Q |
265 |
tatgctttgcttactaatcatggggagcagcaggatagcctttgtgaggatttggtttggcacaaacaggttcctcttgaggtgtctatttttgcttgga |
364 |
Q |
| |
|
|||||| |||||| |||||| | | |||||||||| | ||||| || || ||||||||||||||||| ||||| || ||||||||||||||||||||| |
|
|
| T |
22562 |
tatgctatgcttattaatcaggaagtgcagcaggatggtctttgcgaagaattggtttggcacaaacatgttcccctcaaggtgtctatttttgcttgga |
22463 |
T |
|
| Q |
365 |
gattgattcgagacagacttcctaccaagtccaagttagcttcccgtggtattttgagttcagaggcatgtttatgtgtgtcagggtgtggtgaattgga |
464 |
Q |
| |
|
| ||||||||||| ||||||||||| | ||| || ||||| | |||||||| |||| |||| ||||||| ||||||||| || | | |||| |||| |
|
|
| T |
22462 |
ggttgattcgagatagacttcctacaatgtctaatttagcatttcgtggtatcttgaattcaaaggcatgcttatgtgtgacaagttctggttttgtgga |
22363 |
T |
|
| Q |
465 |
agacgctcgacatttatttttgtcttg |
491 |
Q |
| |
|
||| || |||||||||||||||||||| |
|
|
| T |
22362 |
agatgcacgacatttatttttgtcttg |
22336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 294 - 494
Target Start/End: Complemental strand, 15602444 - 15602244
Alignment:
| Q |
294 |
gcaggatagcctttgtgaggatttggtttggcacaaacaggttcctcttgaggtgtctatttttgcttggagattgattcgagacagacttcctaccaag |
393 |
Q |
| |
|
|||||||| ||||| || |||||||||||||| || || ||||| || |||||||||||||||||||| | ||| |||| || || |||| || ||| |
|
|
| T |
15602444 |
gcaggatatgctttgggacgatttggtttggcataaccatgttccgattaaggtgtctatttttgcttggcggttgcttcgtgatcgatttcccactaag |
15602345 |
T |
|
| Q |
394 |
tccaagttagcttcccgtggtattttgagttcagaggcatgtttatgtgtgtcagggtgtggtgaattggaagacgctcgacatttatttttgtcttgca |
493 |
Q |
| |
|
|| || ||||| |||||||||||||| || |||| ||||||||||| ||||| || || |||||||| || |||||| ||||||||||||||| |
|
|
| T |
15602344 |
tctaacttagcaacccgtggtattttggattttcaggcgtgtttatgtgtatcaggttgcggcatgttggaagatgcacgacatctatttttgtcttgca |
15602245 |
T |
|
| Q |
494 |
g |
494 |
Q |
| |
|
| |
|
|
| T |
15602244 |
g |
15602244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 362
Target Start/End: Original strand, 87248 - 87290
Alignment:
| Q |
320 |
tttggcacaaacaggttcctcttgaggtgtctatttttgcttg |
362 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
87248 |
tttggcacaaacaggttccgcttaaggtgtctatttttgcttg |
87290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 313 - 455
Target Start/End: Original strand, 30712918 - 30713060
Alignment:
| Q |
313 |
gatttggtttggcacaaacaggttcctcttgaggtgtctatttttgcttggagattgattcgagacagacttcctaccaagtccaagttagcttcccgtg |
412 |
Q |
| |
|
|||||||||||||| || || ||||| ||| ||||||||||||| |||||| | ||| |||| || ||||||| || ||||| || |||| || ||| |
|
|
| T |
30712918 |
gatttggtttggcataagcatgttccgcttaaggtgtctattttcgcttggcggttgcttcgtgatcgacttcccactaagtctaacttagtaacctgtg |
30713017 |
T |
|
| Q |
413 |
gtattttgagttcagaggcatgtttatgtgtgtcagggtgtgg |
455 |
Q |
| |
|
|||| ||| || | |||| ||||||||||||||||| ||||| |
|
|
| T |
30713018 |
gtatcttggatttacaggcgtgtttatgtgtgtcaggttgtgg |
30713060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 315 - 365
Target Start/End: Complemental strand, 45270340 - 45270290
Alignment:
| Q |
315 |
tttggtttggcacaaacaggttcctcttgaggtgtctatttttgcttggag |
365 |
Q |
| |
|
||||||||||||||| || ||||| ||| |||| ||||||||||||||||| |
|
|
| T |
45270340 |
tttggtttggcacaaccatgttccgcttaaggtctctatttttgcttggag |
45270290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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