View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13630_low_1 (Length: 405)
Name: NF13630_low_1
Description: NF13630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13630_low_1 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Original strand, 41697150 - 41697559
Alignment:
| Q |
1 |
gtgttaattcaatatatgaacgagggtgcgagcgtgtgtgtgtg----ggataaaacaagacttgtattttctgaaaaacttacctgattaatatgtagg |
96 |
Q |
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|||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41697150 |
gtgttaattcaatatatgaacgagggtgcgtgtgtgtgtgtgtgtgggggataaaacaagacttgtattttctgaaaaacttacctgattaatatgtagg |
41697249 |
T |
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| Q |
97 |
tgacgatacatgtttgcatggaagaaaggtgtttctccaacctcgtgaattgaaattcgctttttggatgcagtttcaacattaacaatcctacgagtac |
196 |
Q |
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||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41697250 |
tgacggtacatgtttgcatggaagaaaggcgtttctccaacctcgtgaattgaaattcgctttttggatgcagtttcaacattaacaatcctacgagtac |
41697349 |
T |
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| Q |
197 |
ttatttcaattaggttataagaatgccccactgaaatttctgatgaacgaatcctctgtcaaaacaagagcataacatattataaacattaaattcataa |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
41697350 |
ttatttcaattaggttataagaatgccccactgaaatttctgatgaacgaatcctctgttaaaacaagagcataacatattataaacattaaattcataa |
41697449 |
T |
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| Q |
297 |
gagttcattaaaattt-aaaaaatgcaaaggctctaaaatcaaacatttatagcatcgtcaatgccagtggcttcaagaatgcctcgcgaaatgaagttg |
395 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41697450 |
gagttcattaaaatttaaaaaaatgcaaaggctctaaaatcaaacatttatagcatcgtcaatgccagtggcttcaagaatgcctcgcgaaatgaagttg |
41697549 |
T |
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| Q |
396 |
cgcccaatcc |
405 |
Q |
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| T |
41697550 |
cgcccaatcc |
41697559 |
T |
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