View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13631_high_10 (Length: 275)
Name: NF13631_high_10
Description: NF13631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13631_high_10 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 8 - 275
Target Start/End: Complemental strand, 17183389 - 17183119
Alignment:
| Q |
8 |
catcatcataaactatttcctttatgaaagtcacccacctcacacaaaaa--taaaaatattataatatctgaatctccatctcttgctagcctttaaca |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
17183389 |
catcatcataaactatttcctttatgaaagtcacccacctcacacaaaaaaataaaaaaattataatatctgaatctccatctcttgctagcctttaaca |
17183290 |
T |
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| Q |
106 |
atatggaattgatgacatgaaaaaggtctagccacaaagccaaattaacaattccatcattataattaaagacaactgtctctgtaaagaagaacccctc |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17183289 |
atatggaattgatgacatgaaaaaggtctagccacaaagccaaattaacaattccatcattataattaaagacaactgtctctgtaaagaagaacccctc |
17183190 |
T |
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| Q |
206 |
tacttgtctcctgactaagaaactagtttatatcatacgg-ctaatataattatgacttaatagcttgcac |
275 |
Q |
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||||||||||||||||||||||||||||||||||||| || || | |||||||||||||||| |||||| |
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| T |
17183189 |
tacttgtctcctgactaagaaactagtttatatcataaggaaaaaaaaaattatgacttaatagtttgcac |
17183119 |
T |
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