View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13631_high_14 (Length: 239)
Name: NF13631_high_14
Description: NF13631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13631_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 2685726 - 2685947
Alignment:
| Q |
1 |
tccatgttcgacgttgaagttgaccacccgaatccacaactagtctagaaaaaatcgatggatttccgatggtaaacgagtagttaacaccgtgttggtt |
100 |
Q |
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| T |
2685726 |
tccatgttcgacgttgaagttgaccacccgaatccacaactagtctagaaaaaatcgatggatttccgatggtaaacgagtagttaacaccgtgttggtt |
2685825 |
T |
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| Q |
101 |
tgatgaaaaattgaaaactattgaatctgtatcatgttgcatctctggtacaccactaaacctttcaccattccatggtccacttcgatatattatgtta |
200 |
Q |
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| T |
2685826 |
tgatgaaaaattgaaaactattgaatctgtatcatgttgcatctctggtacaccactaaacctttcaccattccatggtccacttcgatatattatgtta |
2685925 |
T |
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| Q |
201 |
tcatcattccgtaggaaaatct |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
2685926 |
tcatcattccgtaggaaaatct |
2685947 |
T |
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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 120 - 186
Target Start/End: Complemental strand, 36361228 - 36361162
Alignment:
| Q |
120 |
attgaatctgtatcatgttgcatctctggtacaccactaaacctttcaccattccatggtccacttc |
186 |
Q |
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|||||||||||| | |||||||||||||||||||||| || |||| |||||||||||||||||||| |
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| T |
36361228 |
attgaatctgtaactggttgcatctctggtacaccactgaatcttttaccattccatggtccacttc |
36361162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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