View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13631_high_2 (Length: 812)
Name: NF13631_high_2
Description: NF13631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13631_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 706; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 706; E-Value: 0
Query Start/End: Original strand, 42 - 795
Target Start/End: Complemental strand, 40571276 - 40570522
Alignment:
| Q |
42 |
tgtgaacttggggtaattgaatctcacagcaaccaataccagagcaaggttgattggcgacaatatcagtacgattgttgcagtaagcaacacatcctgt |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40571276 |
tgtgaacttggggtaattgaatctcacagcaaccaataccagagcaaggttgattggcgacaatatcagtacgattgttgcagtaagcaacacatcctgt |
40571177 |
T |
|
| Q |
142 |
ggcgtaggtttttcgcccagaatcagctgcttctaatactcccaccgtgtcacaaccaactgctatcaacttgtttttagttggcgagatgtgaaaatgt |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40571176 |
ggcgtaggtttttcgcccagaatcagctgcttctaatactcccaccgtgtcacaaccaactgctatcaacttgtttttagttggcgagatgtgaaaatgt |
40571077 |
T |
|
| Q |
242 |
gtcatgttgatatcctgaattatttggctcaattttgtaccattttctgaatagcaatcacttgctactggccatgcagcacgcagttcaccgtcaagtg |
341 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
40571076 |
gtcatgttgatatcctgaattatttggctcaattttgtaccattttctgaatagcaatcacttgctactggccatgcagcacgcagttcaccgtcgagtg |
40570977 |
T |
|
| Q |
342 |
agatgtttagaacactttgattagtctgtggcaagaatggtacgtctgttgaggttgaagatgttttgttgcaatcaatgagaaatgtgttgtctagaga |
441 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
40570976 |
agatgtttagaacactttgattagtctgtggcaagaatggtacgtctgttgaggttgaagatgttttgttgcaatcaatgagaaaggtgttgtctagaga |
40570877 |
T |
|
| Q |
442 |
acaattattggtggttccaaatgggaagggaatagtgacattgccacactttgttggacaatttggtagtgacaccggttgagtcgcaacttttgtataa |
541 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40570876 |
acaattattggtggttccaaatgggaagggaatagtgacattgccacactttgttggacaatttggtagtgacaccggttgagtcgcaacttttgtataa |
40570777 |
T |
|
| Q |
542 |
atgacagcgaccaccattagcagcagctgttttgagtgcacatccatgtctttgctannnnnnncaggttcatcgttacaaaaatccatgaatttgttta |
641 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
40570776 |
atgacagcgaccaccattagcagcagctgttttgagtgcacatccatgtctttgctatttttttcaggttcatcgttacaaaaatccatggatttgttta |
40570677 |
T |
|
| Q |
642 |
gtatttattctactttgtaatacaattt-aaaatagaaaaatcaaaatgactgatttttcctacggaatcgaatgatcaaattaagatggtctgtctaat |
740 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40570676 |
gtatttattctactttgtaatgcaatttaaaaatagaaaaatcaaaatgactgatttttcctacggaatcgaatgatcaaattaagatggtctgtctaat |
40570577 |
T |
|
| Q |
741 |
atttattttaatgtaactttagtttttggcgacagtgattgcaacgtttctaact |
795 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
40570576 |
atttattttaatgtaactttagtttttggcaacagtgattgcaacgtttctaact |
40570522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 63 - 508
Target Start/End: Complemental strand, 40577681 - 40577233
Alignment:
| Q |
63 |
tctcacagcaaccaataccagagcaaggttgattggcgacaatatcagtacgattgttgcagtaagcaacacatcctgtggcgtaggtttttcgcccaga |
162 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | |||||| | | |||||||| |||| |||||||||||||||||||||||| | |||| |
|
|
| T |
40577681 |
tctcacagcaaccaataccagagcaaggttgattggcttcgatatcatcaagcctgttgcagaaagccacacatcctgtggcgtaggttttttcctcaga |
40577582 |
T |
|
| Q |
163 |
atcagctgcttctaatac------tcccaccgtgtcacaaccaactgctatcaacttgtttttagttggcgagatgtgaaaatgtgtcatgttgatatcc |
256 |
Q |
| |
|
||||||| || | | | | ||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||| |||||| ||| |
|
|
| T |
40577581 |
atcagcttctccgactgcgagtattcccaccgtgtcacaaccaactgctataaacttgttttgagttg---agatgtgaaaatgtgtcacgttgatttcc |
40577485 |
T |
|
| Q |
257 |
tgaattatttggctcaattttgtaccattttctgaatagcaatcacttgctactggccatgcagcacgcagttcaccgtcaagtgagatgtttagaacac |
356 |
Q |
| |
|
|||| | ||||| | | || ||| ||||||| ||||||||||| || ||||||||||||||| | | |||||||| | |||||||||||||||||||| |
|
|
| T |
40577484 |
tgaaatgtttggtttacttgtgtgccattttttgaatagcaatagctggctactggccatgcaacgtgaagttcaccattaagtgagatgtttagaacac |
40577385 |
T |
|
| Q |
357 |
tttgattagtctgtggcaagaatggtacgtctgttgaggttgaagatgttttgttgcaatcaatgagaaatgtgttgtctagagaacaattattggtggt |
456 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
40577384 |
tttgattagtctgtggcaagaatggtacctctgttgaggttgaagatgttttgttgcaatcgatgagaaaggtgttgtctagagaacaatccttggtggt |
40577285 |
T |
|
| Q |
457 |
tccaaatgggaagggaatagtgacattgccacactttgttggacaatttggt |
508 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
40577284 |
tccaaatgggaagggaatagtgacattgccacactttgttggacagtttggt |
40577233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 48 - 793
Target Start/End: Complemental strand, 40566583 - 40565827
Alignment:
| Q |
48 |
cttggggtaattgaatctcacagcaaccaataccagagcaaggttgattggcgacaatatcagtacgattgttgcagtaagcaacacatcctgtggcgta |
147 |
Q |
| |
|
||||||||| | |||||| || |||||| |||| ||||||| |||| |||| | ||||||| | | ||||||| |||| ||||||||||||| ||| |
|
|
| T |
40566583 |
cttggggtattgaaatctcgcaacaaccagtacctgagcaagattgactggccataatatcatcaagcctgttgcataaagccacacatcctgtggtgta |
40566484 |
T |
|
| Q |
148 |
ggtttttcgcccagaatcagctgcttctaatactcccaccgtgtcacaaccaactgctatcaacttgtttttagttggcgagatgtgaaaatgtgtcatg |
247 |
Q |
| |
|
| | |||| |||||||||| || | | |||| | ||||||||| ||||||||| ||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
40566483 |
gttgtttcccccagaatcaatcgccgagagtgctccaatcgtgtcacagccaactgctgtcaacttgtttcgagttggcgagatgtaaaaatgtgtcatg |
40566384 |
T |
|
| Q |
248 |
ttgatatcctgaattatttggctcaattttgtaccattttctgaatagcaatcacttgctactggccatgcagcacgcagttcaccgtcaagtgagatgt |
347 |
Q |
| |
|
|| |||||| | | ||||| | | | || ||||||| |||||||| || ||||||||||||||| | ||| |||||| | |||||||| | |
|
|
| T |
40566383 |
ttcatatcccgcagcgtttggtatatgaatctgcccttttctgcgtagcaatcgctggctactggccatgcaacgtgcaattcaccattgagtgagatat |
40566284 |
T |
|
| Q |
348 |
ttagaacactttgattagtctgtggcaagaatggtacgtctgttgaggttg------aagatgttttgttgcaatcaatgagaaatgtgttgtctagaga |
441 |
Q |
| |
|
|||| ||| |||||||| ||| |||| | || || | ||||||||||| |||||||||||||||||| ||||||||| || ||||| || || |
|
|
| T |
40566283 |
ttaggacattttgattactcttatccaagtagggaacatgtgttgaggttggagttgaagatgttttgttgcaattaatgagaaaggtattgtcgaggga |
40566184 |
T |
|
| Q |
442 |
acaattattggtggttccaaatgggaagggaatagtgacattgccacactttgttggacaatttggtagtgacaccggttgagtcgcaacttttgtataa |
541 |
Q |
| |
|
|||||| || |||||||||||||| |||||||| ||||| ||||| |||||||| |||||||| ||||||| ||||||||| ||| ||||| ||||| |
|
|
| T |
40566183 |
acaattcttagtggttccaaatggaaagggaatggtgacggaaccacattttgttgggcaatttggaagtgacatcggttgagttgcagcttttatataa |
40566084 |
T |
|
| Q |
542 |
atgacagcgaccaccattagcagcagctgttttgagtgcacatccatgtctttgctannnnnnncaggttcatcgttacaaaaatccat-gaatttgttt |
640 |
Q |
| |
|
|||||||| ||||||| ||||||| ||||||||||||||| ||||| |||||||| ||||||||||| || | |||||| | || ||||||| |
|
|
| T |
40566083 |
atgacagcagccaccatcagcagcaattgttttgagtgcacagccatggctttgctatttttttcaggttcatcggtatacaaatccttagattttgttt |
40565984 |
T |
|
| Q |
641 |
agtattta-ttctact--ttgtaatacaatttaaaatagaaaaatcaaaatgactgatttttcc--tacggaatcgaatgatcaaatt-aagatgg-tct |
733 |
Q |
| |
|
|||||||| || | || |||||| || | ||||||||| ||||||||| ||| |||||| || ||||| ||||||||||||| || | || | | |
|
|
| T |
40565983 |
agtatttatttattctccttgtaa---ccttaataatagaaaagtcaaaatgattgaattttcctgtatggaatggaatgatcaaattaaacacggtttt |
40565887 |
T |
|
| Q |
734 |
gtctaatatttattttaatgtaactttagtttttggcgacagtgattgcaacgtttctaa |
793 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||| ||||||||||||| || ||||| |
|
|
| T |
40565886 |
gtctaacatttattataatgtaactttagtttttggtaacagtgattgcaatgtctctaa |
40565827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 401 - 557
Target Start/End: Complemental strand, 40595607 - 40595451
Alignment:
| Q |
401 |
gatgttttgttgcaatcaatgagaaatgtgttgtctagagaacaattattggtggttccaaatgggaagggaatagtgacattgccacactttgttggac |
500 |
Q |
| |
|
|||||||||||||||| ||||| || | ||||||||| || |||| |||||| |||||||||||||||| || ||| |||||||||| || || |
|
|
| T |
40595607 |
gatgttttgttgcaattgatgaggaaagcgttgtctagggagcaatctttggtgattccaaatgggaaggggattttgatggaaccacactttgctgtac |
40595508 |
T |
|
| Q |
501 |
aatttggtagtgacaccggttgagtcgcaacttttgtataaatgacagcgaccacca |
557 |
Q |
| |
|
| ||||||||||||| ||||||||| || |||||||||||| ||||||||| |||| |
|
|
| T |
40595507 |
agtttggtagtgacatcggttgagttgctgcttttgtataaaagacagcgacaacca |
40595451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 188 - 255
Target Start/End: Complemental strand, 40595823 - 40595756
Alignment:
| Q |
188 |
gtgtcacaaccaactgctatcaacttgtttttagttggcgagatgtgaaaatgtgtcatgttgatatc |
255 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||||||||||| ||||||||||| ||| |||||||| |
|
|
| T |
40595823 |
gtgtcacatccaactgctatcaacttgttttgagttggcgagacgtgaaaatgtggcatcttgatatc |
40595756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 267
Target Start/End: Complemental strand, 40589416 - 40589340
Alignment:
| Q |
191 |
tcacaaccaactgctatcaacttgtttttagttggcgagatgtgaaaatgtgtcatgttgatatcctgaattatttg |
267 |
Q |
| |
|
||||| |||||||||| |||||||||| ||| || |||| |||||||||||||||||||||| ||||||| |||| |
|
|
| T |
40589416 |
tcacagccaactgctaccaacttgtttcgagtgggagagaggtgaaaatgtgtcatgttgataaactgaattgtttg |
40589340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 456 - 542
Target Start/End: Complemental strand, 40600196 - 40600110
Alignment:
| Q |
456 |
ttccaaatgggaagggaatagtgacattgccacactttgttggacaatttggtagtgacaccggttgagtcgcaacttttgtataaa |
542 |
Q |
| |
|
|||||||||| ||||| || |||||| ||||| |||||| |||| ||||||||||||| |||||| | || ||||||||||||| |
|
|
| T |
40600196 |
ttccaaatggaaagggtatggtgacagaaccacattttgtttgacagtttggtagtgacataggttgacttgctacttttgtataaa |
40600110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 240; Significance: 1e-132; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 188 - 598
Target Start/End: Complemental strand, 8490797 - 8490386
Alignment:
| Q |
188 |
gtgtcacaaccaactgctatcaacttgtttttagttggcgagatgtgaaaatgtgtcatgttgatatcctgaattatttggctcaattttgtaccatttt |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| ||||| |||| ||||||||||||||| | || | ||||| ||| | |||| |||| |
|
|
| T |
8490797 |
gtgtcacaaccaactgctatcaacttgtttccggttggtgagatttgaagatgtgtcatgttgatgccaggatatgtttggttcaccagtttaccctttt |
8490698 |
T |
|
| Q |
288 |
ctgaatagcaatcacttgctactggccatgcagcacgcagttcaccgtcaagtgagatgtttagaacactttgattagtctgtggcaagaatggtacgtc |
387 |
Q |
| |
|
| | |||||||||||| ||| |||||||||| || |||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
8490697 |
cagcatagcaatcactgcctattggccatgcaacatgcagttcaccatcgagtgagatgtttagaacactttgattactctgtggcaagaatggtacgtc |
8490598 |
T |
|
| Q |
388 |
tgttgaggttgaagatgttttgttgcaatcaatgagaaatgtgttgtctagagaacaattattggtggttccaaatgggaagggaatagtgacattgcca |
487 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
8490597 |
tgttgaggttgaagacgttttgttgcaatcaatgagaaaggtgttgtctagagaacaactcttggtggttccaaatgggaagggaatagtgacagagcca |
8490498 |
T |
|
| Q |
488 |
cactttgttggacaatttggtagtgacaccggttgagtcgcaacttttgtataaatgacagcgacc-accattagcagcagctgttttgagtgcacatcc |
586 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||| | |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
8490497 |
cactttgttggacagtttggtagtgacgccggttgagtccctacttttgtataaatgacagcaaccaaccattagcagcagctgttttgagtgcacatcc |
8490398 |
T |
|
| Q |
587 |
atgtctttgcta |
598 |
Q |
| |
|
|||||||||||| |
|
|
| T |
8490397 |
atgtctttgcta |
8490386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 670 - 754
Target Start/End: Complemental strand, 8490373 - 8490288
Alignment:
| Q |
670 |
aaaatagaaaaatcaaaatgactgatttttcctacggaatcgaatgatcaaattaagatgg-tctgtctaatatttattttaatgt |
754 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||| | |||||| |||||||| |||||| |
|
|
| T |
8490373 |
aaaatagaaaagtcaaaatgactgatttttcctatggaattgaatgatcaaattaagatggttttgtctattatttattataatgt |
8490288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 739 - 784
Target Start/End: Complemental strand, 8490273 - 8490228
Alignment:
| Q |
739 |
atatttattttaatgtaactttagtttttggcgacagtgattgcaa |
784 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
8490273 |
atatttattataatgtaactttagtttttggcaacagtgattgcaa |
8490228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 293 - 497
Target Start/End: Original strand, 2017336 - 2017552
Alignment:
| Q |
293 |
tagcaatcacttgctactggccatgcagcacgcagttcaccgtcaagtgagatgtttagaacactttgattagtctgtggcaagaatggtacgtctgttg |
392 |
Q |
| |
|
|||||||| || ||||||||||||||| ||||||||||||| ||||| ||||||||||| ||| |||||||||| ||||||| ||| |||| | |||| |
|
|
| T |
2017336 |
tagcaatcgctggctactggccatgcaacacgcagttcaccatcaagcgagatgtttaggacagtttgattagtatgtggcaggaaaggtatatgggttg |
2017435 |
T |
|
| Q |
393 |
aggtt------------gaagatgttttgttgcaatcaatgagaaatgtgttgtctagagaacaattattggtggttccaaatgggaagggaatagtgac |
480 |
Q |
| |
|
||||| ||||||| |||| |||||| |||||||| |||||||| | ||||||| ||||||||||||||||| |||||||| ||||| |
|
|
| T |
2017436 |
aggttgaagaagaagaagaagatgctttggtgcaatttatgagaaaagtgttgtccaaggaacaatccttggtggttccaaatggaaagggaattgtgac |
2017535 |
T |
|
| Q |
481 |
attgccacactttgttg |
497 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
2017536 |
agagccacactttgttg |
2017552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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