View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13631_high_5 (Length: 403)
Name: NF13631_high_5
Description: NF13631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13631_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 17 - 347
Target Start/End: Original strand, 5162628 - 5162958
Alignment:
| Q |
17 |
agattgtagatcttggacttaaaataagagatagtttgactcttggtcagattaaagtttacaagaaaagccttcttccaatcaaaagaataaattaatt |
116 |
Q |
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| T |
5162628 |
agattgttgagcttggacttaaaataagagatagattgactcttggtcagattaaagtttacaagaaaagccttcttccaatcaaaagaataaattaatt |
5162727 |
T |
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| Q |
117 |
attactatcccgttttactcatgattatggttattgaaattgctagtatcaaaattattatcaagtatttgaaagacactttcttgttcctttcttatgc |
216 |
Q |
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| T |
5162728 |
attactgtcccgttttactcatgattatggttattgaaattgctagtatcaaaattattatcaagtatttgaaagacactttcttgttcctttcttatgc |
5162827 |
T |
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| Q |
217 |
ctgtatattcttcattgtagtttcagaatccttatatgttatcatttggatagataaatgcctttagttcaatattaatacaaagttctttctttgtacg |
316 |
Q |
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| T |
5162828 |
ctgcatattcttcattgtagtttcagaatcctgatatgttatcatttagatagataaatacctttagttcaatattaatacaaagttctttctttttacg |
5162927 |
T |
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| Q |
317 |
tctttatatattgtttgtgcctattaaattc |
347 |
Q |
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| T |
5162928 |
tctttatatattgtttgtgcctattaaattc |
5162958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 349 - 384
Target Start/End: Original strand, 5163478 - 5163513
Alignment:
| Q |
349 |
cttactactttaccacctttgcaatttagtacactt |
384 |
Q |
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| T |
5163478 |
cttactactttaccacctttgcaatttagtacactt |
5163513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 89; Significance: 9e-43; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 211 - 347
Target Start/End: Original strand, 40545541 - 40545676
Alignment:
| Q |
211 |
ttatgcctgtatattcttcattgtagtttcagaatccttatatgttatcatttggatagataaatgcctttagttcaatattaatacaaagttctttctt |
310 |
Q |
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| T |
40545541 |
ttatgcatgcatattcttcattgtagtttcagaatcctgatatgttatcatttggatggataagtgtcagaagttcaatattaatacaaagttctttctt |
40545640 |
T |
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| Q |
311 |
tgtacgtctttatatattgtttgtgcctattaaattc |
347 |
Q |
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| T |
40545641 |
t-tacgtctttatatattgattgtgcctattaaattc |
40545676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 203 - 300
Target Start/End: Original strand, 31789935 - 31790032
Alignment:
| Q |
203 |
ttcctttcttatgcctgtatattcttcattgtagtttcagaatccttatatgttatcatttggatagataaatgcctttagttcaatattaatacaaa |
300 |
Q |
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| T |
31789935 |
ttccttttttatgcctgcatattctccattgtagtttcagaatccagatatgttatcatttggatggataaatgtcataagttcaatattaatacaaa |
31790032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 74 - 153
Target Start/End: Original strand, 31789755 - 31789838
Alignment:
| Q |
74 |
tttacaagaaaagccttcttccaatcaaaagaata---aattaattatta-ctatcccgttttactcatgattatggttattga |
153 |
Q |
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| T |
31789755 |
tttacaagaaaagccttcttccaatcaaaataataaataattaattattatttgtcccgttttactcatgattgtggttattga |
31789838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 57 - 106
Target Start/End: Original strand, 40545333 - 40545382
Alignment:
| Q |
57 |
tcttggtcagattaaagtttacaagaaaagccttcttccaatcaaaagaa |
106 |
Q |
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| T |
40545333 |
tcttgatcagattaaagtttacaagaaaagccttattccaatcaaaagaa |
40545382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 31789870 - 31789918
Alignment:
| Q |
156 |
ttgctagtatcaaaattattatcaagtatttgaaagacactttcttgtt |
204 |
Q |
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| T |
31789870 |
ttgctaatatcaaaattattatcaagtatttgaaagacacattcttgtt |
31789918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 154 - 200
Target Start/End: Original strand, 40545460 - 40545506
Alignment:
| Q |
154 |
aattgctagtatcaaaattattatcaagtatttgaaagacactttct |
200 |
Q |
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| T |
40545460 |
aattgctaatatcaaaactattatcaagtatttgaaagacactttct |
40545506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 153
Target Start/End: Original strand, 32033111 - 32033190
Alignment:
| Q |
79 |
aagaaaagccttcttccaatcaaaa-gaataaat---taattattacta-tcccgttttactcatgattatggttattga |
153 |
Q |
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| T |
32033111 |
aagaaaagccttcttccaatcaaaaagaataaataattaattattatttgtcccgttttactcatgattgtggttattga |
32033190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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