View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13631_high_6 (Length: 391)
Name: NF13631_high_6
Description: NF13631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13631_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 23830577 - 23830950
Alignment:
| Q |
1 |
atattatatttagataatatcttagccaatagtagaattgggagtgaggataaagaaagaggggccggtgttcacccatcgcttgcataagtcatcatgt |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||| |
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| T |
23830577 |
atattaaatttagataatatcttagccaatagtagaattgggagtgaggataaaaaaagagggaccggtgttcacccatcacttgcataagtcatcatgt |
23830676 |
T |
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| Q |
101 |
taaaggccaaaaaaggttcaattatgctccacttgcttacaagtcatggaagcttaccacttgctagagccaacttatagtacgagaagctatctgaaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23830677 |
taaaggccaaaaaaggttcaattatgctccacttgcttacaagtcatggaagcttaccacttgctagagccaacttatagtacgagaagctatctgaaac |
23830776 |
T |
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| Q |
201 |
caaatgtagggatgttaacagtaaaatctaatggactagaaaactttgcnnnnnnnntattaaggattttgtccaatcaaaacaaaacaaaagggggtcc |
300 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23830777 |
caaatgtcgggatgttaacagtaaaatctaatggactagaaaactttgc-aaaaaaatattaaggattttgtccaatcaaaacaaaacaaaagggggtcc |
23830875 |
T |
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| Q |
301 |
attacagttaaaccagttcccacaacatgtcatacaatgaatgtcatgcatgaatcaccatactcaccttccttc |
375 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23830876 |
attacagttaaaccagttcccacaacatgtcatacaatgaatgtcatgcatgaatcaccatactcaccttccttc |
23830950 |
T |
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