View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13631_low_3 (Length: 654)
Name: NF13631_low_3
Description: NF13631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13631_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 602; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 602; E-Value: 0
Query Start/End: Original strand, 13 - 638
Target Start/End: Original strand, 39893266 - 39893891
Alignment:
| Q |
13 |
tgaagcgtcgttgccattaccacctgaacaagtatccatttatgggataccactccttgctgacgaaagaagtgacgtaattctgttgaaatttctgcgt |
112 |
Q |
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| T |
39893266 |
tgaagcgtcattgccattaccacctgaacaagtatccatttatgggataccactccttgctgacgaaacaagtgacgtaattctgttgaaatttctgcgt |
39893365 |
T |
|
| Q |
113 |
gcaagagattttaaggtcaaagaggctttcacaatgatcaagaacacaattctctggagaaaagaatttggaatagaggagttaatggatgagaaactgg |
212 |
Q |
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| T |
39893366 |
gcaagagattttaaggtcaaagaggctttcacaatgatcaagaacacaattctctggagaaaagaatttggaatagaggagttaatggatgagaaactgg |
39893465 |
T |
|
| Q |
213 |
gtgatgaattggagaaagtggtttacatgcatggatttgataaggaaggtcaccctgtatgttataacatatatggtgaatttcagaacaaggaattgta |
312 |
Q |
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| T |
39893466 |
gtgatgaattggagaaagtggtttacatgcatggatttgataaggaaggtcaccctgtatgttataacatatatggtgaatttcagaacaaggaattgta |
39893565 |
T |
|
| Q |
313 |
taacaagactttttctgatgaagagaagagacataatttccttaaatggagaattcagttccttgagaagagtattaggaatttggattttaacaatggt |
412 |
Q |
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| T |
39893566 |
taacaagactttttctgatgaagagaagagacataatttccttaaatggagaattcagttccttgagaagagtattaggaatttggattttaaccatggt |
39893665 |
T |
|
| Q |
413 |
ggtgtatgcaccattgttcatgtcaatgatcttaaggattctcctggaccaggtaaatgggaacttagacaagctaccaaacaagcccttcaactgtttc |
512 |
Q |
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| T |
39893666 |
ggtgtttgcaccattgttcatgtcaatgatcttaaggattctcctggaccaggtaaatgggaacttagacaagctaccaaacaagcccttcaactgtttc |
39893765 |
T |
|
| Q |
513 |
aggacaattaccctgaatttgtggccaaacaggtaatttgattggtgtgtttttatgttatattttgcatgatatttaatatatgtccaatgtgatgtta |
612 |
Q |
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| T |
39893766 |
aggacaattaccctgaatttgtggccaaacaggtaatttgattggtgtgtttttatgttatattttgcatgatacttagtatatgtccaatgtgatgtta |
39893865 |
T |
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| Q |
613 |
cctttgaataaccaacgtatattgtt |
638 |
Q |
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| T |
39893866 |
cctttgaataaccaacgtatattgtt |
39893891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 134; Significance: 2e-69; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 56 - 547
Target Start/End: Original strand, 44641841 - 44642338
Alignment:
| Q |
56 |
gggataccactccttgctgacgaaagaagtgacgtaattctgttgaaatttctgcgtgcaagagattttaaggtcaaagaggctttcacaatgatcaaga |
155 |
Q |
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|||||||||||||| || ||||| |||| ||||| ||||||||||| ||||| || || ||||| || || || ||||| || |||||||||||||||| |
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| T |
44641841 |
gggataccactcctcgcagacgatagaaccgacgtgattctgttgaagtttctccgagccagagacttcaaagtgaaagaagcattcacaatgatcaaga |
44641940 |
T |
|
| Q |
156 |
acacaattctctggagaaaagaatttggaatagaggagtt---aatggatgagaaactgggtgatgaat---tggagaaagtggtttacatgcatggatt |
249 |
Q |
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| T |
44641941 |
acactatccgttggagaaaagagttcaaaatcgaagagttgttattagatgaaaacttaggtgatgaatatttagagaaaactgtttacatgcatggcta |
44642040 |
T |
|
| Q |
250 |
tgataaggaaggtcaccctgtatgttataacatatatggtgaatttcagaacaaggaattgtataacaagactttttctgatgaagagaagagacataat |
349 |
Q |
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| T |
44642041 |
tgataaagaaggacaccctgtttgttataatatttatggagagtttgataacaaggaggtttataagaaaacattttcagatgaagagaagagagaaaga |
44642140 |
T |
|
| Q |
350 |
ttccttaaatggagaattcagttccttgagaagagtattaggaatttggattttaacaatggtggtgtatgcaccattgttcatgtcaatgatcttaagg |
449 |
Q |
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||| | ||||||||||||| | || | ||||||||||| ||||| |||||||||| | ||||||| |||||||||||||||| || |||||||||||| |
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| T |
44642141 |
ttcttgaaatggagaattctggtcttggagaagagtataaggaaattggattttacccctggtggtatatgcaccattgttcaggttaatgatcttaaga |
44642240 |
T |
|
| Q |
450 |
attctcctggaccaggtaaatgggaacttagacaagctaccaaacaagcccttcaactgtttcaggacaattaccctgaatttgtggccaaacaggta |
547 |
Q |
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||||||||||||| |||||||| |||||||||||||||||||||||||||||| || |||| || ||||| ||||||||||| |||||||||||| |
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| T |
44642241 |
attctcctggacctaccaaatgggagcttagacaagctaccaaacaagcccttcaattgcttcaagataattatcctgaatttgtagccaaacaggta |
44642338 |
T |
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