View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13631_low_4 (Length: 648)

Name: NF13631_low_4
Description: NF13631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13631_low_4
NF13631_low_4
[»] chr5 (25 HSPs)
chr5 (252-631)||(37435255-37435637)
chr5 (224-631)||(37382531-37382941)
chr5 (224-631)||(37393082-37393492)
chr5 (224-631)||(37823449-37823859)
chr5 (268-631)||(37401247-37401613)
chr5 (268-631)||(37639291-37639657)
chr5 (224-631)||(37702228-37702638)
chr5 (268-631)||(37711049-37711415)
chr5 (268-630)||(37593750-37594115)
chr5 (268-630)||(37696141-37696506)
chr5 (263-630)||(37532646-37533016)
chr5 (401-631)||(37413547-37413780)
chr5 (224-341)||(37428578-37428695)
chr5 (224-408)||(37639652-37639836)
chr5 (224-408)||(37401068-37401252)
chr5 (224-408)||(37711410-37711594)
chr5 (224-408)||(37594110-37594294)
chr5 (224-408)||(37696501-37696685)
chr5 (224-298)||(37413452-37413526)
chr5 (112-213)||(6273241-6273342)
chr5 (115-211)||(14351830-14351926)
chr5 (159-211)||(17644142-17644194)
chr5 (139-213)||(32383804-32383878)
chr5 (159-211)||(18942364-18942416)
chr5 (159-211)||(35456622-35456674)
[»] chr4 (8 HSPs)
chr4 (224-620)||(24217936-24218335)
chr4 (268-631)||(16843245-16843611)
chr4 (236-631)||(16845877-16846279)
chr4 (224-408)||(16843066-16843250)
chr4 (97-212)||(43245591-43245705)
chr4 (97-195)||(13428667-13428764)
chr4 (154-218)||(10006678-10006742)
chr4 (159-211)||(4414530-4414582)
[»] chr3 (4 HSPs)
chr3 (369-620)||(14552928-14553182)
chr3 (172-211)||(51537138-51537177)
chr3 (159-211)||(29727852-29727904)
chr3 (111-197)||(35054597-35054683)
[»] chr8 (4 HSPs)
chr8 (97-218)||(26403518-26403632)
chr8 (172-211)||(28761630-28761669)
chr8 (111-212)||(38712111-38712212)
chr8 (111-195)||(32493073-32493157)
[»] scaffold0712 (1 HSPs)
scaffold0712 (111-212)||(4816-4917)
[»] scaffold0709 (1 HSPs)
scaffold0709 (111-212)||(4836-4937)
[»] chr1 (6 HSPs)
chr1 (116-213)||(3794258-3794355)
chr1 (111-213)||(3014060-3014162)
chr1 (149-211)||(32364236-32364298)
chr1 (111-213)||(24638812-24638914)
chr1 (111-213)||(44410825-44410927)
chr1 (111-218)||(40960100-40960207)
[»] chr7 (5 HSPs)
chr7 (97-208)||(35331681-35331793)
chr7 (138-213)||(31813601-31813676)
chr7 (139-213)||(5419006-5419080)
chr7 (172-213)||(46170754-46170795)
chr7 (172-212)||(33610704-33610744)
[»] chr2 (5 HSPs)
chr2 (113-213)||(6065401-6065501)
chr2 (159-211)||(16106651-16106703)
chr2 (159-211)||(21800619-21800671)
chr2 (172-213)||(10810507-10810548)
chr2 (140-213)||(26606644-26606717)
[»] chr6 (1 HSPs)
chr6 (172-211)||(29419718-29419757)


Alignment Details
Target: chr5 (Bit Score: 165; Significance: 6e-88; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 252 - 631
Target Start/End: Complemental strand, 37435637 - 37435255
Alignment:
Q  252 acattgatctaagttccaacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttactctctaacaacaacttcacaggaggcat 351  Q
    ||||||| || |||| |||||| |||||||||||  ||||||||||| |    ||||||||  ||||||| ||||| |||||||||||| |||||| |||    
T  37435637 acattgacctcagtttcaacaaattgcaaggagacattccaattccatccgatggcattgaatactttttgctctcaaacaacaacttcgcaggagacat 37435538  T
Q  352 ttcttcaacattgtgccatgcaagctcccttaatgtgctcaatttagctcacaacaaattaacaggcatgatcccacaatgcctgggaacatttccttct 451  Q
    |||||||| ||||||||| ||||||||| | || ||||||||||| || ||||||||||| |||||||| || ||| ||||||||||||||||||||| |    
T  37435537 ttcttcaaaattgtgccaagcaagctccatgaacgtgctcaatttggcccacaacaaattgacaggcataattccaaaatgcctgggaacatttcctttt 37435438  T
Q  452 ctttccattttggatatgcaaacgaacaaccttagtggaagcttgcct---actttttccaaagaaaatgtatttgcgactataaagttgaatgacaacc 548  Q
    |||||| ||||||||||||||| ||||||||||| ||||||| |||||   |||||||||| || |||||  || | ||||||||||||||||| |||||    
T  37435437 ctttccgttttggatatgcaaatgaacaaccttaatggaagcatgcctaaaactttttccagaggaaatgccttcgagactataaagttgaatggcaacc 37435338  T
Q  549 aattagacggaccattgccacaatctttgcctcactgtataaaactcgaagttttggaccttggagacaacaatgtagaggat 631  Q
    ||||||| |||||||| || ||||||||| ||||||||| | ||||| || |||||||||||||| |||||||  ||||||||    
T  37435337 aattagaaggaccattacctcaatctttggctcactgtacagaactcaaaattttggaccttggatacaacaacatagaggat 37435255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 224 - 631
Target Start/End: Original strand, 37382531 - 37382941
Alignment:
Q  224 ctcttacacacatggaaggacatttggcacattgatctaagttccaacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttac 323  Q
    |||||||||||||||| |||||||   ||  ||||||| |||| ||||||||||||||||||||||||||| |||  ||  |||||| |  |||||||||    
T  37382531 ctcttacacacatggagggacattcaacatgttgatctcagtttcaacaagttgcaaggagatcttccaatcccacgttatggcatttactactttttac 37382630  T
Q  324 tctctaacaacaacttcacaggaggcatttcttcaacattgtgccatgcaagctcccttaatgtgctcaatttagctcacaacaaattaacaggcatgat 423  Q
    |||| ||||||||||||||||||  ||||  ||   |||||||| | ||||| ||||| |||||||||||||| ||||||||||| ||||| ||||||||    
T  37382631 tctcgaacaacaacttcacaggaaacattgatttttcattgtgcaacgcaagttccctgaatgtgctcaatttggctcacaacaatttaactggcatgat 37382730  T
Q  424 cccacaatgcctgggaacatttccttctctttccattttggatatgcaaacgaacaaccttagtggaagcttgcct---actttttccaaagaaaatgta 520  Q
     ||||||||| ||||||||||||||||||||||  | ||||||||||||| |||||||||   ||||  | | |||   || || ||||||| ||||| |    
T  37382731 tccacaatgcttgggaacatttccttctctttcggtattggatatgcaaatgaacaacctctatggacacattcctagaaccttctccaaaggaaatgca 37382830  T
Q  521 tttgcgactataaagttgaatgacaaccaattagacggaccattgccacaatctttgcctcactgtataaaactcgaagttttggaccttggagacaaca 620  Q
    |||| ||| |||||||||||||  |||| ||| || |||||||| ||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  37382831 tttgagacaataaagttgaatggaaaccgattggaaggaccattaccacagtctttggctcactgtacaaaactcgaagttttggaccttggagacaaca 37382930  T
Q  621 atgtagaggat 631  Q
    | |||||||||    
T  37382931 acgtagaggat 37382941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 224 - 631
Target Start/End: Original strand, 37393082 - 37393492
Alignment:
Q  224 ctcttacacacatggaaggacatttggcacattgatctaagttccaacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttac 323  Q
    |||||| || ||||||||||||||   |||||||| || |||| ||||||||| ||||| ||||||||||||||| ||   ||||||||  |||||||||    
T  37393082 ctcttaaactcatggaaggacattatacacattgacctgagtttcaacaagttacaaggtgatcttccaattccacctgatggcattgaagactttttac 37393181  T
Q  324 tctctaacaacaacttcacaggaggcatttcttcaacattgtgccatgcaagctcccttaatgtgctcaatttagctcacaacaaattaacaggcatgat 423  Q
    |||| |||||||||||||||||||  |||||||||||||| ||| |||| || |||||| || | |||||||| ||||||||||| || ||||| |||||    
T  37393182 tctcaaacaacaacttcacaggagatatttcttcaacattctgcaatgctagttccctttatatcctcaatttggctcacaacaatttgacaggtatgat 37393281  T
Q  424 cccacaatgcctgggaacatttccttctctttccattttggatatgcaaacgaacaaccttagtggaagcttgcct---actttttccaaagaaaatgta 520  Q
     |||||||| || ||||||||| ||| ||| || |||||||||||||||| |||||||||  |||||||| | |||   || |||||||||| |||| ||    
T  37393282 tccacaatgtctaggaacattttcttatctctctattttggatatgcaaatgaacaacctctgtggaagcattcctggaaccttttccaaaggaaatata 37393381  T
Q  521 tttgcgactataaagttgaatgacaaccaattagacggaccattgccacaatctttgcctcactgtataaaactcgaagttttggaccttggagacaaca 620  Q
    |||| ||||||||| |||||||  |||||||| || |||||||| ||||||| |||| || |||||  | | || ||||| ||||||||||| |||||||    
T  37393382 tttgagactataaaattgaatggaaaccaattggaaggaccattaccacaatgtttggcttactgttcatatcttgaagtattggaccttggtgacaaca 37393481  T
Q  621 atgtagaggat 631  Q
    |  ||||||||    
T  37393482 acatagaggat 37393492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 224 - 631
Target Start/End: Complemental strand, 37823859 - 37823449
Alignment:
Q  224 ctcttacacacatggaaggacatttggcacattgatctaagttccaacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttac 323  Q
    |||||| || |||||||||||||||||  | |||| || |||| ||||||||| ||||||||||||||||||||| |||  |||||| |  |||||| ||    
T  37823859 ctcttaaactcatggaaggacatttggtccgttgacctcagtttcaacaagttacaaggagatcttccaattccaccttctggcattcaatacttttcac 37823760  T
Q  324 tctctaacaacaacttcacaggaggcatttcttcaacattgtgccatgcaagctcccttaatgtgctcaatttagctcacaacaaattaacaggcatgat 423  Q
    |||| || |||||||||||||||  ||||||||||||||| ||| |||| || |||||| || ||||| |||| ||||||||||| || ||||| |||||    
T  37823759 tctcaaataacaacttcacaggatacatttcttcaacattctgcaatgccagttccctttatatgctcgatttggctcacaacaatttgacaggtatgat 37823660  T
Q  424 cccacaatgcctgggaacatttccttctctttccattttggatatgcaaacgaacaaccttagtggaagcttgcct---actttttccaaagaaaatgta 520  Q
     ||||||||||||||||||||   |||||||    | ||||||||||||| |||||||||   ||||||| | |||   || ||| |||||| ||||| |    
T  37823659 tccacaatgcctgggaacattaaattctcttcatgtattggatatgcaaatgaacaacctctatggaagcattcctagaacctttaccaaaggaaatgca 37823560  T
Q  521 tttgcgactataaagttgaatgacaaccaattagacggaccattgccacaatctttgcctcactgtataaaactcgaagttttggaccttggagacaaca 620  Q
    |||| ||||||||||||||||| ||||||||| || |||||||| |||||||||||| || |||||  | | || ||||||||||||||||| |||||||    
T  37823559 tttgagactataaagttgaatggcaaccaattggaaggaccattaccacaatctttggctaactgttcatatcttgaagttttggaccttggtgacaaca 37823460  T
Q  621 atgtagaggat 631  Q
    | || ||||||    
T  37823459 acgttgaggat 37823449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 268 - 631
Target Start/End: Original strand, 37401247 - 37401613
Alignment:
Q  268 caacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttactctctaacaacaacttcacaggaggcatttcttcaacattgtgc 367  Q
    |||||| || ||||||||||||||||||||| |||  |||||| |  |||||| |||||| || |||||||||||||||  ||||||||||||||| |||    
T  37401247 caacaactttcaaggagatcttccaattccaccttctggcattcaatacttttcactctcaaataacaacttcacaggatacatttcttcaacattctgc 37401346  T
Q  368 catgcaagctcccttaatgtgctcaatttagctcacaacaaattaacaggcatgatcccacaatgcctgggaacatttccttctctttccattttggata 467  Q
     |||| || |||||| |||||||| |||| ||||||||||| || ||||| ||||| ||||||||||||||||||||  ||||||||    | |||||||    
T  37401347 aatgccagttccctttatgtgctcgatttggctcacaacaatttgacaggtatgattccacaatgcctgggaacattaacttctcttaatgtattggata 37401446  T
Q  468 tgcaaacgaacaaccttagtggaagcttgcct---actttttccaaagaaaatgtatttgcgactataaagttgaatgacaaccaattagacggaccatt 564  Q
    |||||| |||||||||   ||||||| | |||   || ||| |||||| ||||| ||||| ||||||||||||||||| ||||||||| || ||||||||    
T  37401447 tgcaaatgaacaacctctatggaagcattcctagaacctttaccaaaggaaatgcatttgagactataaagttgaatggcaaccaattggaaggaccatt 37401546  T
Q  565 gccacaatctttgcctcactgtataaaactcgaagttttggaccttggagacaacaatgtagaggat 631  Q
     |||||||||||| || |||||  | | || ||||||||||||||||| |||||||| || ||||||    
T  37401547 accacaatctttggctaactgttcatatcttgaagttttggaccttggtgacaacaacgttgaggat 37401613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 268 - 631
Target Start/End: Complemental strand, 37639657 - 37639291
Alignment:
Q  268 caacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttactctctaacaacaacttcacaggaggcatttcttcaacattgtgc 367  Q
    |||||| || ||||||||||||||||||||| |||  |||||| |  |||||| |||||| || |||||||||||||||  ||||||||||||||| |||    
T  37639657 caacaactttcaaggagatcttccaattccaccttctggcattaaatacttttcactctcaaataacaacttcacaggatacatttcttcaacattctgc 37639558  T
Q  368 catgcaagctcccttaatgtgctcaatttagctcacaacaaattaacaggcatgatcccacaatgcctgggaacatttccttctctttccattttggata 467  Q
     |||| || |||||| || ||||| |||| ||||||||||| || ||||| ||||| ||||||||||||||||||||  |||||||| |  | |||||||    
T  37639557 aatgccagttccctttatatgctcgatttggctcacaacaatttgacaggtatgattccacaatgcctgggaacattaacttctcttactgtattggata 37639458  T
Q  468 tgcaaacgaacaaccttagtggaagcttgcct---actttttccaaagaaaatgtatttgcgactataaagttgaatgacaaccaattagacggaccatt 564  Q
    |||||| |||||||||   ||||||| | |||   || || ||||||| ||||| ||||| ||||||||||||||||| ||||||||| || ||||||||    
T  37639457 tgcaaatgaacaacctctatggaagcattcctagaaccttctccaaaggaaatgcatttgagactataaagttgaatggcaaccaattggaaggaccatt 37639358  T
Q  565 gccacaatctttgcctcactgtataaaactcgaagttttggaccttggagacaacaatgtagaggat 631  Q
     |||||||||||| || |||||  | | || ||||||||||||||||| |||||||| || ||||||    
T  37639357 accacaatctttggctaactgttcatatcttgaagttttggaccttggtgacaacaacgttgaggat 37639291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 224 - 631
Target Start/End: Complemental strand, 37702638 - 37702228
Alignment:
Q  224 ctcttacacacatggaaggacatttggcacattgatctaagttccaacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttac 323  Q
    |||||| || ||||||||||||||   |||||| | || |||| ||| | |||||||||| |||||||||||||| ||   |||||||   |||||||||    
T  37702638 ctcttaaactcatggaaggacattatacacattaacctgagtttcaaaatgttgcaaggacatcttccaattccacctcatggcattgtacactttttac 37702539  T
Q  324 tctctaacaacaacttcacaggaggcatttcttcaacattgtgccatgcaagctcccttaatgtgctcaatttagctcacaacaaattaacaggcatgat 423  Q
    |||| ||||||||||||||||||   || ||||||||||| ||| ||||||| |||||| |  | |||||||| ||||||||||| || ||||| |||||    
T  37702538 tctcaaacaacaacttcacaggaaatatctcttcaacattctgcaatgcaagttccctttacattctcaatttggctcacaacaatttgacaggtatgat 37702439  T
Q  424 cccacaatgcctgggaacatttccttctctttccattttggatatgcaaacgaacaaccttagtggaagcttgcct---actttttccaaagaaaatgta 520  Q
     |||||||| |||||||||||||||  ||| || |||||||||||||||| |||||||||   ||||||| | |||   || || ||||||| ||||| |    
T  37702438 tccacaatgtctgggaacatttcctcatctctctattttggatatgcaaatgaacaacctctatggaagcattcctagaaccttctccaaaggaaatgca 37702339  T
Q  521 tttgcgactataaagttgaatgacaaccaattagacggaccattgccacaatctttgcctcactgtataaaactcgaagttttggaccttggagacaaca 620  Q
    |||| ||||||||||||||||| ||||||||| || |||||||| || || |||||| |||| |||  ||| || ||||| ||||||||||| |||||||    
T  37702338 tttgagactataaagttgaatggcaaccaattggaaggaccattaccgcagtctttggctcaatgttcaaatcttgaagtattggaccttggtgacaaca 37702239  T
Q  621 atgtagaggat 631  Q
    |  ||||||||    
T  37702238 acatagaggat 37702228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 268 - 631
Target Start/End: Complemental strand, 37711415 - 37711049
Alignment:
Q  268 caacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttactctctaacaacaacttcacaggaggcatttcttcaacattgtgc 367  Q
    |||||| || ||||||||||||||||||||| |||  |||||| |  |||||| |||||| || |||||||||||||||  ||||||||||||||| |||    
T  37711415 caacaactttcaaggagatcttccaattccaccttctggcattcaatacttttcactctcaaataacaacttcacaggatacatttcttcaacattctgc 37711316  T
Q  368 catgcaagctcccttaatgtgctcaatttagctcacaacaaattaacaggcatgatcccacaatgcctgggaacatttccttctctttccattttggata 467  Q
     |||| || |||||| |||||||| |||| ||||||||||| || | ||| ||||| ||||||||||| ||||||||||||  ||| |   |||||||||    
T  37711315 aatgccagttccctttatgtgctcgatttggctcacaacaatttgaaaggtatgattccacaatgcctaggaacatttcctaatctctatgttttggata 37711216  T
Q  468 tgcaaacgaacaaccttagtggaagcttgcct---actttttccaaagaaaatgtatttgcgactataaagttgaatgacaaccaattagacggaccatt 564  Q
    |||||| |||||||||   ||||||| | |||   || ||| |||||| ||||| ||||| ||||||||||||||||| ||||||||| || ||| ||||    
T  37711215 tgcaaatgaacaacctctatggaagcattcctagaacctttaccaaaggaaatgcatttgagactataaagttgaatggcaaccaattggaaggatcatt 37711116  T
Q  565 gccacaatctttgcctcactgtataaaactcgaagttttggaccttggagacaacaatgtagaggat 631  Q
     |||||||||||| || |||||  | | || ||||||||||||||||| |||||||| || ||||||    
T  37711115 accacaatctttggctaactgttcatatcttgaagttttggaccttggtgacaacaacgttgaggat 37711049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 268 - 630
Target Start/End: Complemental strand, 37594115 - 37593750
Alignment:
Q  268 caacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttactctctaacaacaacttcacaggaggcatttcttcaacattgtgc 367  Q
    |||||| || ||||||||||||||||||||| ||   |||||| | |||| ||||||||| |||||||| ||||||||||  || ||||||||||| |||    
T  37594115 caacaactttcaaggagatcttccaattccacctgatggcattaaaaactatttactctcaaacaacaatttcacaggagatatatcttcaacattctgc 37594016  T
Q  368 catgcaagctcccttaatgtgctcaatttagctcacaacaaattaacaggcatgatcccacaatgcctgggaacatttccttctctttccattttggata 467  Q
     ||||||| | ||| ||||| |||||||| ||||||||||| |||||||| ||||| ||||||||||||||||||||  ||||||||    | |||||||    
T  37594015 aatgcaagttacctgaatgttctcaatttggctcacaacaatttaacaggtatgattccacaatgcctgggaacattaacttctcttaatgtattggata 37593916  T
Q  468 tgcaaacgaacaaccttagtggaagcttgcct---actttttccaaagaaaatgtatttgcgactataaagttgaatgacaaccaattagacggaccatt 564  Q
    |||||| |||||||||   ||||| | | |||   || |||||||||||||||| ||||  |||||||||||||||||  |||||||| || ||||||||    
T  37593915 tgcaaatgaacaacctctatggaaacattcctagaaccttttccaaagaaaatgcatttcagactataaagttgaatggaaaccaattggaaggaccatt 37593816  T
Q  565 gccacaatctttgcctcactgtataaaactcgaagttttggaccttggagacaacaatgtagagga 630  Q
     ||||| |||||| ||||||||  |   || ||||||||||||||||| ||||||||  |||||||    
T  37593815 accacagtctttgtctcactgttcatttcttgaagttttggaccttggtgacaacaacatagagga 37593750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 268 - 630
Target Start/End: Complemental strand, 37696506 - 37696141
Alignment:
Q  268 caacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttactctctaacaacaacttcacaggaggcatttcttcaacattgtgc 367  Q
    |||||| || ||||||||||||||||||||| ||   |||||| | |||| ||||||||| |||||||| ||||||||||  || ||||||||||| |||    
T  37696506 caacaattttcaaggagatcttccaattccacctgatggcattaaaaactatttactctcaaacaacaatttcacaggagatatatcttcaacattctgc 37696407  T
Q  368 catgcaagctcccttaatgtgctcaatttagctcacaacaaattaacaggcatgatcccacaatgcctgggaacatttccttctctttccattttggata 467  Q
     ||||||| | ||| ||||| |||||||| ||||||||||| |||||||| ||||| ||||||||||||||||||||  ||||||||    | |||||||    
T  37696406 aatgcaagttacctgaatgttctcaatttggctcacaacaatttaacaggtatgattccacaatgcctgggaacattaacttctcttaatgtattggata 37696307  T
Q  468 tgcaaacgaacaaccttagtggaagcttgcct---actttttccaaagaaaatgtatttgcgactataaagttgaatgacaaccaattagacggaccatt 564  Q
    |||||| |||||||||   ||||| | | |||   || |||||||||||||||| ||||  |||||||||||||||||  |||||||| || ||||||||    
T  37696306 tgcaaatgaacaacctctatggaaacattcctagaaccttttccaaagaaaatgcatttcagactataaagttgaatggaaaccaattggaaggaccatt 37696207  T
Q  565 gccacaatctttgcctcactgtataaaactcgaagttttggaccttggagacaacaatgtagagga 630  Q
     ||||| |||||| ||||||||  |   || ||||||||||||||||| ||||||||  |||||||    
T  37696206 accacagtctttgtctcactgttcatttcttgaagttttggaccttggtgacaacaacatagagga 37696141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 263 - 630
Target Start/End: Complemental strand, 37533016 - 37532646
Alignment:
Q  263 agttccaacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttactctctaacaacaacttcacaggaggcatttcttcaacat 362  Q
    |||| ||||||||| ||||||||||||||||||||| ||   |||||||   |||||| |||||| || ||||||||||||||||  |||||||||||||    
T  37533016 agtttcaacaagttacaaggagatcttccaattccacctgatggcattggatacttttcactctcaaataacaacttcacaggagatatttcttcaacat 37532917  T
Q  363 tgtgccatgcaagctcccttaatgtgctcaatttagctcacaacaaattaacaggcatgatcccacaatgcctgggaacatttccttctctttccatttt 462  Q
    | ||| ||||||| | ||| ||||| |||||||| ||||||||||| || ||||| ||||| ||||||||||||||||||||  ||||||||    | ||    
T  37532916 tctgcaatgcaagttacctgaatgttctcaatttggctcacaacaatttgacaggtatgattccacaatgcctgggaacattaacttctcttaatgtatt 37532817  T
Q  463 ggatatgcaaacgaacaaccttagtggaagcttgcct---actttttccaaagaaaatgtatttgcgactataaagttgaatgacaaccaattagacgga 559  Q
    ||||||||||| |||||||||   ||||| | | |||   || |||||||||||||||| ||||  |||||||||||||||||  |||||||| || |||    
T  37532816 ggatatgcaaatgaacaacctctatggaaacattcctagaaccttttccaaagaaaatgcatttcagactataaagttgaatggaaaccaattggaagga 37532717  T
Q  560 ccattgccacaatctttgcctcactgtataaaactcgaagttttggaccttggagacaacaatgtagagga 630  Q
    ||||| || || |||||| ||||||||  |   || ||||||||||||||||| ||||||||  |||||||    
T  37532716 ccattaccccagtctttgtctcactgttcatttcttgaagttttggaccttggtgacaacaacatagagga 37532646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 401 - 631
Target Start/End: Original strand, 37413547 - 37413780
Alignment:
Q  401 cacaacaaattaacaggcatgatcccacaatgcctgggaacatttccttctctttccattttggatatgcaaacgaacaaccttagtggaagcttgcct- 499  Q
    |||||||| |||||||||||||| ||||||||||| |||||||||||||||||||| || ||||||||||||| ||||||| |   ||||||||| |||     
T  37413547 cacaacaatttaacaggcatgattccacaatgcctaggaacatttccttctctttctatattggatatgcaaatgaacaacttgtatggaagctttccta 37413646  T
Q  500 --actttttccaaagaaaatgtatttgcgactataaagttgaatgacaaccaattagacggaccattgccacaatctttgcctcactgtataaaactcga 597  Q
      || |||||||||| ||||  ||||| ||  ||||||||||| |  || ||||| || |||||||| ||||| |||||| || | || ||||| || ||    
T  37413647 gaaccttttccaaaggaaatacatttgagatgataaagttgaacggaaatcaattggaaggaccattaccacagtctttggcttagtgcataaatcttga 37413746  T
Q  598 agttttggaccttggagacaacaatgtagaggat 631  Q
    |||| |||||||||| ||||||||| ||||||||    
T  37413747 agttctggaccttggtgacaacaatatagaggat 37413780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 224 - 341
Target Start/End: Complemental strand, 37428695 - 37428578
Alignment:
Q  224 ctcttacacacatggaaggacatttggcacattgatctaagttccaacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttac 323  Q
    |||||| || |||||||| | ||||||||| ||||||| |||| ||||||||||||||||||||||||||||||| |||  ||||||||  |||||||||    
T  37428695 ctcttaaactcatggaagtatatttggcacgttgatctcagtttcaacaagttgcaaggagatcttccaattccaccttatggcattgaatactttttac 37428596  T
Q  324 tctctaacaacaacttca 341  Q
    ||||||||||||||||||    
T  37428595 tctctaacaacaacttca 37428578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 224 - 408
Target Start/End: Complemental strand, 37639836 - 37639652
Alignment:
Q  224 ctcttacacacatggaaggacatttggcacattgatctaagttccaacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttac 323  Q
    |||||| ||||||||||||||||| || |||||||||| |||| ||||| |||||||||| |||||||||||||| ||   |||||||   |||||||||    
T  37639836 ctcttaaacacatggaaggacattcggtacattgatcttagtttcaacatgttgcaaggacatcttccaattccacctgatggcattgtatactttttac 37639737  T
Q  324 tctctaacaacaacttcacaggaggcatttcttcaacattgtgccatgcaagctcccttaatgtgctcaatttagctcacaacaa 408  Q
    |||| || |||||||||||||||   ||||||||||||||  || | ||||| |||||| ||   |||||||| |||||||||||    
T  37639736 tctcaaataacaacttcacaggaaatatttcttcaacattccgcaacgcaagttccctttataccctcaatttggctcacaacaa 37639652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 224 - 408
Target Start/End: Original strand, 37401068 - 37401252
Alignment:
Q  224 ctcttacacacatggaaggacatttggcacattgatctaagttccaacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttac 323  Q
    |||||| || ||||||||||||||  | || | || || |||| ||||||||| ||||||||||||||||||||| |||  ||||||||  |||||| ||    
T  37401068 ctcttaaactcatggaaggacattcagtacttagacctcagtttcaacaagttacaaggagatcttccaattccaccttctggcattgaatacttttcac 37401167  T
Q  324 tctctaacaacaacttcacaggaggcatttcttcaacattgtgccatgcaagctcccttaatgtgctcaatttagctcacaacaa 408  Q
    |||| || |||||||||||||||  ||||||||||||||| ||| ||||||| ||||||  |   |||||||| |||||||||||    
T  37401168 tctcaaataacaacttcacaggatacatttcttcaacattctgcaatgcaagttcccttcgtaccctcaatttggctcacaacaa 37401252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 224 - 408
Target Start/End: Complemental strand, 37711594 - 37711410
Alignment:
Q  224 ctcttacacacatggaaggacatttggcacattgatctaagttccaacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttac 323  Q
    |||||| || |||||||||||||| || |||||||||| |||| ||||| ||||||||||||||||||||||||| | |  |||||| |  |||||| ||    
T  37711594 ctcttaaactcatggaaggacattcggtacattgatcttagtttcaacatgttgcaaggagatcttccaattccaccatctggcattcaatacttttcac 37711495  T
Q  324 tctctaacaacaacttcacaggaggcatttcttcaacattgtgccatgcaagctcccttaatgtgctcaatttagctcacaacaa 408  Q
    |||| || |||||||||||||||   ||||||||||||||  || | ||||| |||||| ||   |||||||| |||||||||||    
T  37711494 tctcaaataacaacttcacaggaaatatttcttcaacattccgcaacgcaagttccctttataccctcaatttggctcacaacaa 37711410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 224 - 408
Target Start/End: Complemental strand, 37594294 - 37594110
Alignment:
Q  224 ctcttacacacatggaaggacatttggcacattgatctaagttccaacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttac 323  Q
    |||||| || ||||||| || |||| | |||||||  | |||| ||||||||| ||||||||||||||||||||| |||  |||||| |  |||||| ||    
T  37594294 ctcttaaactcatggaatgagatttcgtacattgacttgagtttcaacaagttacaaggagatcttccaattccaccttctggcattcaatacttttcac 37594195  T
Q  324 tctctaacaacaacttcacaggaggcatttcttcaacattgtgccatgcaagctcccttaatgtgctcaatttagctcacaacaa 408  Q
    |||| || |||||||||||||||   |||||||||||||| ||| ||||||| |||||| ||   |||||||| |||||||||||    
T  37594194 tctcaaataacaacttcacaggaaatatttcttcaacattctgcaatgcaagttccctttataccctcaatttggctcacaacaa 37594110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 224 - 408
Target Start/End: Complemental strand, 37696685 - 37696501
Alignment:
Q  224 ctcttacacacatggaaggacatttggcacattgatctaagttccaacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttac 323  Q
    |||||| || ||||||||||||||  | || | || || |||| ||||||||| ||||||||||||||||||||| |||   ||||||   |||||| ||    
T  37696685 ctcttaaactcatggaaggacattcaggacttagacctcagtttcaacaagttacaaggagatcttccaattccaccttctagcattggatacttttcac 37696586  T
Q  324 tctctaacaacaacttcacaggaggcatttcttcaacattgtgccatgcaagctcccttaatgtgctcaatttagctcacaacaa 408  Q
    |||| ||||||||||||||||||   |||||||||||||| ||| ||||||| |||||| ||   |||||||| |||||||||||    
T  37696585 tctcaaacaacaacttcacaggaaatatttcttcaacattctgcaatgcaagttccctttataccctcaatttggctcacaacaa 37696501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 224 - 298
Target Start/End: Original strand, 37413452 - 37413526
Alignment:
Q  224 ctcttacacacatggaaggacatttggcacattgatctaagttccaacaagttgcaaggagatcttccaattcca 298  Q
    |||||||||||||||| ||| ||| | || || ||||| |||| |||||||||||||||||||||||||||||||    
T  37413452 ctcttacacacatggagggaaattcgacatatcgatctcagtttcaacaagttgcaaggagatcttccaattcca 37413526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 112 - 213
Target Start/End: Complemental strand, 6273342 - 6273241
Alignment:
Q  112 tttagtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttat 211  Q
    |||||||||||||||    |||||||  |||||||  |||| || ||||| |||||  | ||||||||||||||||| |||||||||| |||||||||||    
T  6273342 tttagtttttaagtgtctgagtcattcattcaatccgatttaatctggttcaatacatataaaaatttaatcttaaggccgagtcatctaaccgagttat 6273243  T
Q  212 tc 213  Q
    ||    
T  6273242 tc 6273241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 211
Target Start/End: Original strand, 14351830 - 14351926
Alignment:
Q  115 agtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttat 211  Q
    ||||||||||||||  ||||||| |||||| |  |||| ||  | ||||||||| | ||||||||||||||||||||| |||||  |||||||||||    
T  14351830 agtttttaagtggtcgagtcattggttcaaccctatttaataagattaaatacctataaaaatttaatcttaagaccgggtcatataaccgagttat 14351926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 159 - 211
Target Start/End: Original strand, 17644142 - 17644194
Alignment:
Q  159 gttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttat 211  Q
    |||||||||| | ||| |||||||||||||||||||||||  |||||||||||    
T  17644142 gttaaatacctataaatatttaatcttaagaccgagtcatttaaccgagttat 17644194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 139 - 213
Target Start/End: Original strand, 32383804 - 32383878
Alignment:
Q  139 gttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttattc 213  Q
    ||||||||  |||| || || ||||||||| | |||||||||||||| |||||| ||||||  ||||||||||||    
T  32383804 gttcaatctgatttaatctgattaaatacctataaaaatttaatcttgagaccgggtcatcttaccgagttattc 32383878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 18942416 - 18942364
Alignment:
Q  159 gttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttat 211  Q
    |||||||||| | ||| |||||||||||||||||||||||  ||| |||||||    
T  18942416 gttaaatacctataaatatttaatcttaagaccgagtcatttaactgagttat 18942364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 35456674 - 35456622
Alignment:
Q  159 gttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttat 211  Q
    |||||||||| | ||| |||||||||||||||| ||||||  |||||||||||    
T  35456674 gttaaatacctataaatatttaatcttaagaccaagtcatttaaccgagttat 35456622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 134; Significance: 2e-69; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 224 - 620
Target Start/End: Original strand, 24217936 - 24218335
Alignment:
Q  224 ctcttacacacatggaaggacatttggcacattgatctaagttccaacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttac 323  Q
    |||||||||||||||||||| ||| |    ||| |||| |||| |||||||||||||||||| ||||| |||||| | |  || ||| |  |||||| ||    
T  24217936 ctcttacacacatggaaggaaattcgaattattaatctcagtttcaacaagttgcaaggagaccttccgattccaccctatggaattcaatacttttcac 24218035  T
Q  324 tctctaacaacaacttcacaggaggcatttcttcaacattgtgccatgcaagctcccttaatgtgctcaatttagctcacaacaaattaacaggcatgat 423  Q
    |||| ||||||||||||||||||| |||| |||   || ||||| ||||||| ||||| ||| |||||||||| ||| ||||||| |||||||| | |||    
T  24218036 tctcaaacaacaacttcacaggagacattgctttgtcactgtgcaatgcaagttccctgaatttgctcaatttggctaacaacaatttaacaggaacgat 24218135  T
Q  424 cccacaatgcctgggaacatttccttctctttccattttggatatgcaaacgaacaaccttagtggaagcttgcct---actttttccaaagaaaatgta 520  Q
     ||||||||||||||||||||||||| ||||||  | ||||||||||||| |||||||||   ||||||| |||||   || |||||  ||| ||||| |    
T  24218136 tccacaatgcctgggaacatttccttatctttctgtattggatatgcaaatgaacaacctctatggaagcatgcctaaaacattttcggaaggaaatgca 24218235  T
Q  521 tttgcgactataaagttgaatgacaaccaattagacggaccattgccacaatctttgcctcactgtataaaactcgaagttttggaccttggagacaaca 620  Q
    || | ||||||||||||||||| ||||||||| || |||||||| ||||| |||||| ||||||| | | |||| |||||||||||||||||||||||||    
T  24218236 ttcgagactataaagttgaatggcaaccaattggagggaccattaccacagtctttggctcactgcacacaacttgaagttttggaccttggagacaaca 24218335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 268 - 631
Target Start/End: Original strand, 16843245 - 16843611
Alignment:
Q  268 caacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttactctctaacaacaacttcacaggaggcatttcttcaacattgtgc 367  Q
    |||||| || ||||||||||||||||||||| ||   |||||||   |||||| |||||| || ||||||||||||||||  |||||||||||||| |||    
T  16843245 caacaattttcaaggagatcttccaattccacctgatggcattgtatacttttcactctcaaataacaacttcacaggagatatttcttcaacattctgc 16843344  T
Q  368 catgcaagctcccttaatgtgctcaatttagctcacaacaaattaacaggcatgatcccacaatgcctgggaacatttccttctctttccattttggata 467  Q
     |||||||  |||||||| |||| ||||| ||||||||||| || ||||| ||||| ||||||||||| ||||||||  ||||||||    | |||||||    
T  16843345 aatgcaagtacccttaatttgcttaatttggctcacaacaatttgacaggtatgattccacaatgcctaggaacattaacttctcttaatgtattggata 16843444  T
Q  468 tgcaaacgaacaaccttagtggaagcttgcct---actttttccaaagaaaatgtatttgcgactataaagttgaatgacaaccaattagacggaccatt 564  Q
    |||||| |||||||||   ||||||| | |||   || |||||||||| ||||| ||||  |||||||||||||||||  |||||||| || ||||||||    
T  16843445 tgcaaatgaacaacctctatggaagcattcctaaaaccttttccaaaggaaatgcatttcagactataaagttgaatggaaaccaattggaaggaccatt 16843544  T
Q  565 gccacaatctttgcctcactgtataaaactcgaagttttggaccttggagacaacaatgtagaggat 631  Q
     ||||| |||||| ||||||||  | | || ||||||||||||||||| ||||||||  ||||||||    
T  16843545 accacagtctttgtctcactgttcatatcttgaagttttggaccttggtgacaacaacatagaggat 16843611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 236 - 631
Target Start/End: Original strand, 16845877 - 16846279
Alignment:
Q  236 tggaaggacatttggcacattgatctaagttccaacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttactctctaacaaca 335  Q
    |||||||||||| | |||||||| || |||| |||||| |||||||||||  |||||||||||  ||  |||||| |  ||||||| ||||| |||||||    
T  16845877 tggaaggacattcgacacattgacctcagtttcaacaaattgcaaggagacattccaattccatattatggcattaaatactttttgctctcaaacaaca 16845976  T
Q  336 acttcacaggaggcatttcttcaacattgtgccatgcaagctcccttaatgtgctcaatttagctcacaacaaattaacaggcatg----atcccacaat 431  Q
    ||||||||| ||  || ||||| ||||| |||  |||||| | ||| | ||| |||||||| ||||||||||| |||| | | |||    || |||||||    
T  16845977 acttcacagaagatatgtcttccacattctgcagtgcaagtttcctgattgttctcaatttggctcacaacaatttaatatgtatgatatattccacaat 16846076  T
Q  432 gcctgggaacatttccttctctttccattttggatatgcaaacgaacaaccttagtggaagcttgcct---actttttccaaagaaaatgtatttgcgac 528  Q
    || ||||||||||  ||||||||    | ||||||||||||| |||||||||   ||||||| | |||   || |||||||||| |||||| ||||  ||    
T  16846077 gcttgggaacattaacttctcttaatgtattggatatgcaaatgaacaacctctttggaagcattcctagaaccttttccaaaggaaatgtgtttgtcac 16846176  T
Q  529 tataaagttgaatgacaaccaattagacggaccattgccacaatctttgcctcactgtataaaactcgaagttttggaccttggagacaacaatgtagag 628  Q
    |||||||||||||| ||||||||| || |||||||| ||||  |||||  || |||||  | | || ||||||||||||||||| ||||||||  |||||    
T  16846177 tataaagttgaatggcaaccaattggaaggaccattaccacggtctttagctaactgttcatatcttgaagttttggaccttggtgacaacaacatagag 16846276  T
Q  629 gat 631  Q
    |||    
T  16846277 gat 16846279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 224 - 408
Target Start/End: Original strand, 16843066 - 16843250
Alignment:
Q  224 ctcttacacacatggaaggacatttggcacattgatctaagttccaacaagttgcaaggagatcttccaattccagctttaggcattgagaactttttac 323  Q
    |||||| |||||||||| ||||||||| |||||||||| |||| |||||| |||||||||||  ||||||||||| |||  ||| || |  ||||||  |    
T  16843066 ctcttaaacacatggaatgacatttggtacattgatcttagtttcaacaaattgcaaggagacattccaattccatcttatggccttcaatacttttcgc 16843165  T
Q  324 tctctaacaacaacttcacaggaggcatttcttcaacattgtgccatgcaagctcccttaatgtgctcaatttagctcacaacaa 408  Q
    |||| ||||||||||||||||||| ||||||||||||||| ||| ||||||| | | | ||||| |||||||| |||||||||||    
T  16843166 tctcaaacaacaacttcacaggagacatttcttcaacattctgcaatgcaagtttcttgaatgttctcaatttggctcacaacaa 16843250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 97 - 212
Target Start/End: Original strand, 43245591 - 43245705
Alignment:
Q  97 atatacatattacattttagtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtc 196  Q
    ||||||||||| |||||||||||||||||| | | |||||||||||||| |||||| ||||||||||||||||| || |||||||| |||||||||||||    
T  43245591 atatacatattgcattttagtttttaagtgatga-gtcattagttcaattaaatttaatttggttaaataccaataacaatttaatattaagaccgagtc 43245689  T
Q  197 atccaaccgagttatt 212  Q
    ||   |||||||||||    
T  43245690 atatgaccgagttatt 43245705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 97 - 195
Target Start/End: Original strand, 13428667 - 13428764
Alignment:
Q  97 atatacatattacattttagtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagt 195  Q
    |||||||||||||||||||||||||||||| |  |||||||||||||||||||||| |||||||| |||| ||| ||||||||||| ||||||||||||    
T  13428667 atatacatattacattttagtttttaagtg-tcgagtcattagttcaatcaaatttaatttggttgaatatcaataaaaatttaatattaagaccgagt 13428764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 218
Target Start/End: Original strand, 10006678 - 10006742
Alignment:
Q  154 atttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttattctattt 218  Q
    |||||||| |||||| | |||||||||||||||||||| | ||||| ||||||||||||| ||||    
T  10006678 atttggtttaatacctataaaaatttaatcttaagaccaattcatctaaccgagttattcgattt 10006742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 4414582 - 4414530
Alignment:
Q  159 gttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttat 211  Q
    |||||||||| | ||| |||||||||||||||||||||||  || ||||||||    
T  4414582 gttaaatacctataaatatttaatcttaagaccgagtcatttaatcgagttat 4414530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 5e-33; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 369 - 620
Target Start/End: Complemental strand, 14553182 - 14552928
Alignment:
Q  369 atgcaagctcccttaatgtgctcaatttagctcacaacaaattaacaggcatgatcccacaatgcctgggaacatttccttctctttccattttggatat 468  Q
    ||||||| |||||| || |||||||||| ||||||||||| || ||||| ||||| |||||||||||||| |||||||||  ||| || |||||||||||    
T  14553182 atgcaagttccctttatatgctcaatttggctcacaacaatttgacaggtatgattccacaatgcctggggacatttcctcttctctctattttggatat 14553083  T
Q  469 gcaaacgaacaaccttagtggaagcttgcct---actttttccaaagaaaatgtatttgcgactataaagttgaatgacaaccaattagacggaccattg 565  Q
    ||||| |||||||||   ||||| | | |||   || ||||| |||| ||||| ||||| |||||||||||||||||  ||||||||  | |||||| |     
T  14553082 gcaaatgaacaacctctatggaatcattcctagaaccttttcaaaaggaaatgcatttgagactataaagttgaatggaaaccaattgaaaggaccacta 14552983  T
Q  566 ccacaatctttgcctcactgtataaaactcgaagttttggaccttggagacaaca 620  Q
    ||||| || ||| ||||||||  ||| || ||||| || |||||||| |||||||    
T  14552982 ccacagtcattggctcactgttcaaatcttgaagtattagaccttggtgacaaca 14552928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 172 - 211
Target Start/End: Original strand, 51537138 - 51537177
Alignment:
Q  172 aaaaatttaatcttaagaccgagtcatccaaccgagttat 211  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  51537138 aaaaatttaatcttaagaccgagtcatctaaccgagttat 51537177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 29727904 - 29727852
Alignment:
Q  159 gttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttat 211  Q
    |||||||| | | |||||||||||||||||||||||||||| ||| |||||||    
T  29727904 gttaaatagctataaaaatttaatcttaagaccgagtcatctaactgagttat 29727852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 111 - 197
Target Start/End: Original strand, 35054597 - 35054683
Alignment:
Q  111 ttttagtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtca 197  Q
    |||||||||||||||||    |||||  |||||||| ||||| || | |||||||||  | |||||||||||| |||||||||||||    
T  35054597 ttttagtttttaagtggccgggtcatcggttcaatccaatttaatctagttaaatacatataaaaatttaatcgtaagaccgagtca 35054683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 7e-23; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 97 - 218
Target Start/End: Original strand, 26403518 - 26403632
Alignment:
Q  97 atatacatattacattttagtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtc 196  Q
    ||||||||||||||||||||||||||||||||  ||||||||||| | ||||||||       ||||||||||| ||||||| ||||||| |||| ||||    
T  26403518 atatacatattacattttagtttttaagtggtcgagtcattagttgactcaaattt-------ttaaataccaataaaaattgaatcttacgaccaagtc 26403610  T
Q  197 atccaaccgagttattctattt 218  Q
    |||  |||||||||||||||||    
T  26403611 atctgaccgagttattctattt 26403632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 211
Target Start/End: Original strand, 28761630 - 28761669
Alignment:
Q  172 aaaaatttaatcttaagaccgagtcatccaaccgagttat 211  Q
    |||||||||||||||||||||||||| | |||||||||||    
T  28761630 aaaaatttaatcttaagaccgagtcacctaaccgagttat 28761669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 212
Target Start/End: Original strand, 38712111 - 38712212
Alignment:
Q  111 ttttagtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagtta 210  Q
    |||||||||||||||||   ||||||  ||||||||  |||| || | |||||||||  | |||||||||||| ||||||||| ||| |  |||||||||    
T  38712111 ttttagtttttaagtggccgagtcatcggttcaatccgatttaatctagttaaatacatataaaaatttaatcgtaagaccgaatcaacttaccgagtta 38712210  T
Q  211 tt 212  Q
    ||    
T  38712211 tt 38712212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 111 - 195
Target Start/End: Original strand, 32493073 - 32493157
Alignment:
Q  111 ttttagtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagt 195  Q
    |||||||||||||||||   ||||||  ||||||||  |||| || | |||||||||  | |||||||||||| |||||||||||    
T  32493073 ttttagtttttaagtggccgagtcatgggttcaatccgatttaatctagttaaatacacataaaaatttaatcgtaagaccgagt 32493157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0712 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: scaffold0712
Description:

Target: scaffold0712; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 111 - 212
Target Start/End: Original strand, 4816 - 4917
Alignment:
Q  111 ttttagtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagtta 210  Q
    |||||||||||||||||   |||||| |||||||||  |||| || |||||||||||| | |||||||||||||||||||||  ||||| ||| ||||||    
T  4816 ttttagtttttaagtggctgagtcatcagttcaatccgatttaatctggttaaatacctataaaaatttaatcttaagaccggatcatctaactgagtta 4915  T
Q  211 tt 212  Q
    ||    
T  4916 tt 4917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0709 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: scaffold0709
Description:

Target: scaffold0709; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 111 - 212
Target Start/End: Original strand, 4836 - 4937
Alignment:
Q  111 ttttagtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagtta 210  Q
    |||||||||||||||||   |||||| |||||||||  |||| || |||||||||||| | |||||||||||||||||||||  ||||| ||| ||||||    
T  4836 ttttagtttttaagtggctgagtcatcagttcaatccgatttaatctggttaaatacctataaaaatttaatcttaagaccggatcatctaactgagtta 4935  T
Q  211 tt 212  Q
    ||    
T  4936 tt 4937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 213
Target Start/End: Complemental strand, 3794355 - 3794258
Alignment:
Q  116 gtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttattc 213  Q
    |||||||||| ||  |||||| |||||||||  |||| || || ||||||||| | |||||||||||||||||| || |||||| |||||||||||||    
T  3794355 gtttttaagtagtcgagtcatcagttcaatccgatttaatatgattaaatacctataaaaatttaatcttaagatcgggtcatctaaccgagttattc 3794258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 213
Target Start/End: Original strand, 3014060 - 3014162
Alignment:
Q  111 ttttagtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagtta 210  Q
    ||||||||||||||| ||  |||||   ||||||||  |||| || | |||||||||| | ||||||||||||||||||||| |||||  ||||||||||    
T  3014060 ttttagtttttaagtagtcgagtcacgggttcaatccgatttaatatagttaaatacctataaaaatttaatcttaagaccgggtcatttaaccgagtta 3014159  T
Q  211 ttc 213  Q
    |||    
T  3014160 ttc 3014162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 211
Target Start/End: Complemental strand, 32364298 - 32364236
Alignment:
Q  149 attttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttat 211  Q
    |||| |||||||||||||   | |||||||||||||||||||||||||||| |||||||||||    
T  32364298 atttaatttggttaaatagttataaaaatttaatcttaagaccgagtcatctaaccgagttat 32364236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 111 - 213
Target Start/End: Complemental strand, 24638914 - 24638812
Alignment:
Q  111 ttttagtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagtta 210  Q
    |||||||||||||||||   ||||||  ||||||||  |||| || | |||||||||  | |||||||||||| ||||||||||||| |  |||||||||    
T  24638914 ttttagtttttaagtggccgagtcatcggttcaatcctatttaatctagttaaatacatataaaaatttaatcgtaagaccgagtcaacttaccgagtta 24638815  T
Q  211 ttc 213  Q
    |||    
T  24638814 ttc 24638812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 111 - 213
Target Start/End: Complemental strand, 44410927 - 44410825
Alignment:
Q  111 ttttagtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagtta 210  Q
    |||| ||||||||||||   ||||||| ||||||||  |||| ||  |||||| |||| | ||| |||||||||||| ||||||||||| | ||||||||    
T  44410927 tttttgtttttaagtggccgagtcattggttcaatccgatttaatcgggttaattacctataaagatttaatcttaaaaccgagtcatctagccgagtta 44410828  T
Q  211 ttc 213  Q
    |||    
T  44410827 ttc 44410825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 218
Target Start/End: Original strand, 40960100 - 40960207
Alignment:
Q  111 ttttagtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagtta 210  Q
    |||||||||||||||  | |||||||  ||||||||  || | |  |||||||||||| | ||||| |||||||||||| || |||||  ||||||||||    
T  40960100 ttttagtttttaagtaatcaagtcatcggttcaatccgatctaacctggttaaatacctataaaaaattaatcttaagatcgggtcatgtaaccgagtta 40960199  T
Q  211 ttctattt 218  Q
    ||| ||||    
T  40960200 ttcaattt 40960207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 97 - 208
Target Start/End: Complemental strand, 35331793 - 35331681
Alignment:
Q  97 atatacatattacattttagtttttaagtggtaaagt-cattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagt 195  Q
    ||||||||||||||||||||||| ||||||   | |  ||||| ||||||||||||| ||||||||||||   || ||||||||||||||||||  ||||    
T  35331793 atatacatattacattttagtttctaagtgtcgacggacattaattcaatcaaatttaatttggttaaatcttaataaaaatttaatcttaagatggagt 35331694  T
Q  196 catccaaccgagt 208  Q
    |||  ||||||||    
T  35331693 catttaaccgagt 35331681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 138 - 213
Target Start/End: Complemental strand, 31813676 - 31813601
Alignment:
Q  138 agttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttattc 213  Q
    ||||||||| ||||| || |||||||||||| | |||||||||| ||||||||||  ||||| |||||||||||||    
T  31813676 agttcaatccaatttaatatggttaaatacctataaaaatttaaccttaagaccggatcatctaaccgagttattc 31813601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 213
Target Start/End: Complemental strand, 5419080 - 5419006
Alignment:
Q  139 gttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttattc 213  Q
    |||||||| ||| | || |||||||||||| | ||||||||||||||||||| | ||||| ||||||||||||||    
T  5419080 gttcaatccaatctaatctggttaaatacctataaaaatttaatcttaagacagggtcatacaaccgagttattc 5419006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 172 - 213
Target Start/End: Complemental strand, 46170795 - 46170754
Alignment:
Q  172 aaaaatttaatcttaagaccgagtcatccaaccgagttattc 213  Q
    ||||||||||||||||| |||||||||| |||||||||||||    
T  46170795 aaaaatttaatcttaaggccgagtcatctaaccgagttattc 46170754  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 172 - 212
Target Start/End: Complemental strand, 33610744 - 33610704
Alignment:
Q  172 aaaaatttaatcttaagaccgagtcatccaaccgagttatt 212  Q
    |||||||||||||||| | ||||||||| ||||||||||||    
T  33610744 aaaaatttaatcttaaaaacgagtcatctaaccgagttatt 33610704  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 113 - 213
Target Start/End: Original strand, 6065401 - 6065501
Alignment:
Q  113 ttagtttttaagtggtaaagtcattagttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttatt 212  Q
    |||||||||||||||   ||||||  ||||||||  |||| || || ||||||||| | ||||| ||| ||||||| || ||||||| ||||||||||||    
T  6065401 ttagtttttaagtggccgagtcatcggttcaatccgatttaatctgattaaatacctataaaaaattattcttaaggccaagtcatcaaaccgagttatt 6065500  T
Q  213 c 213  Q
    |    
T  6065501 c 6065501  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 159 - 211
Target Start/End: Original strand, 16106651 - 16106703
Alignment:
Q  159 gttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttat 211  Q
    |||||||| | | |||||||||||||||||| ||||||||| |||||||||||    
T  16106651 gttaaatagctataaaaatttaatcttaagatcgagtcatctaaccgagttat 16106703  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 159 - 211
Target Start/End: Original strand, 21800619 - 21800671
Alignment:
Q  159 gttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttat 211  Q
    |||||||||| | ||| |||||||||||||||||||||||  |||||||||||    
T  21800619 gttaaatacctataaatatttaatcttaagaccgagtcatttaaccgagttat 21800671  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 213
Target Start/End: Original strand, 10810507 - 10810548
Alignment:
Q  172 aaaaatttaatcttaagaccgagtcatccaaccgagttattc 213  Q
    ||||||||||||||| ||||| ||||| ||||||||||||||    
T  10810507 aaaaatttaatcttacgaccgggtcatacaaccgagttattc 10810548  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 213
Target Start/End: Complemental strand, 26606717 - 26606644
Alignment:
Q  140 ttcaatcaaattttatttggttaaataccaacaaaaatttaatcttaagaccgagtcatccaaccgagttattc 213  Q
    ||||||| ||| | || ||||| |||||| | ||||||||||||||||||  | |||||| |||||||||||||    
T  26606717 ttcaatccaatctaatctggttcaatacctataaaaatttaatcttaagattgggtcatctaaccgagttattc 26606644  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 211
Target Start/End: Original strand, 29419718 - 29419757
Alignment:
Q  172 aaaaatttaatcttaagaccgagtcatccaaccgagttat 211  Q
    |||||||||||||||||||||||||| | |||||||||||    
T  29419718 aaaaatttaatcttaagaccgagtcacctaaccgagttat 29419757  T

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