View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13631_low_5 (Length: 576)
Name: NF13631_low_5
Description: NF13631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13631_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 10 - 472
Target Start/End: Original strand, 36362565 - 36363029
Alignment:
| Q |
10 |
catcatcactagcagatgcatagggtggaatataatcatcgaatcccaatagctcagctgttaaatttccacagttagttagacagcagtnnnnnnngt- |
108 |
Q |
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| T |
36362565 |
catcatcactagcagatgcatagggtggaatataatcatcgaatcccaatagctcagctgttaaatttccacagttagttagacaacagtaaaaaaaaaa |
36362664 |
T |
|
| Q |
109 |
-ttactgtgcatttacaaaatgtgaaagaatcaatattatatgcaagaatatgtcctactttaatcttgtgtttgttannnnnnnnaccaaatcggtaat |
207 |
Q |
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| T |
36362665 |
attactgtgcatttacaaaatgtgaaagaatcaatattatatgcaagaatatgtcctactttaatcttgtgtttgttattttttttaccaaatcggtaat |
36362764 |
T |
|
| Q |
208 |
tctggtaattttttatctctttggcagtaaatttatgtctcatgatgcactttacctttgtcaaaaatataaagcatactgtcttaaattgcatatttaa |
307 |
Q |
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| T |
36362765 |
tctggtaattttttatctctttggcagtaaatttatgtctcatgatgcactttacctttgtcaaaaatataaagcatactgtcttaaattgcatatttaa |
36362864 |
T |
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| Q |
308 |
tgctaccaaacagaaccatgtgaatggaatggaatggaatttaaagcccggtcacaagattcacactcatcaagaggtgtagtagagtactagcatcatg |
407 |
Q |
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| T |
36362865 |
tgctaccaaacagaaccatgtgaatggaatggaatggaatttaaagcccggtcacaagattcacactcatcaagaggtgtagtagagtactagcatcatg |
36362964 |
T |
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| Q |
408 |
gttctgttttagttctgtgcatgctatattatgatttcccttttaaggaccatgcttctaggtgg |
472 |
Q |
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| T |
36362965 |
gttctgttttagttctgtgcatgctatattatgatttcactattaaggaccatgcttctaggtgg |
36363029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 506 - 576
Target Start/End: Original strand, 36363053 - 36363123
Alignment:
| Q |
506 |
ttggggaattgggaaatattataaggcttagttttttggtccctattttgactaaatatcaatttggatct |
576 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
36363053 |
ttggggaattgggaaatattataaggcttagttttttggtccctattttgactaaatctcaatttggatct |
36363123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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