View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13631_low_6 (Length: 499)
Name: NF13631_low_6
Description: NF13631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13631_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 39 - 481
Target Start/End: Complemental strand, 3542467 - 3542026
Alignment:
| Q |
39 |
aacctgtgttttgttaacagcaaatcgaagctgtcctaactcggattttagtgccaaaatgaattcgtcgtttaatctgcagaacttaagagtcacggtg |
138 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3542467 |
aacctgtgttttgttaacagcaaatcgaagctgtcctaactcggattttagtgccaaaatgaattcgtcgtttaatctgcagaacttaagagtcacggtg |
3542368 |
T |
|
| Q |
139 |
cattgatataaaaacagactcaacacaacagaatatagagatgaatcccattcatctgaaaagtactacaaaccgtggtctcattcttgcaatctcaaat |
238 |
Q |
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|||||||||||||| ||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3542367 |
cattgatataaaaatagactcagcacaacagaatatagaggtgaatcccattcatttgaaaagtactacaaaccgtggtctcattcttgcaatctcaaat |
3542268 |
T |
|
| Q |
239 |
tcaatctcctgagcttcagtgtcaagcaagtattcaatgaggtcttgtggagtatcaggaacatcacgagactaagcaaatgaaaaataagagattaaat |
338 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
3542267 |
tcaatctcctgagcttcagtgtcaagcaagtattcaatgaggtcttgtggagtatcaggaacatcacgagactaagcaaatgaaaaataagatattaaat |
3542168 |
T |
|
| Q |
339 |
cattgaatcttgataaaataataaaggctacagagaaagaagcattcaagaaatcaataagcagtcaatttagtctccaaagtttcacgctctctccaat |
438 |
Q |
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||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3542167 |
cattgaatcttcatagaataataaaggctacagagaaa-aagcattcaagaaatcaataagcagtcaatttagtctccaaagtttcacgctctctccaat |
3542069 |
T |
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| Q |
439 |
ttaatctctaaattatatgaaattttgtcattttagttcttaa |
481 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3542068 |
ttaatctctaaattatatgaaattttgtcattttagttcttaa |
3542026 |
T |
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