View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13631_low_9 (Length: 367)
Name: NF13631_low_9
Description: NF13631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13631_low_9 |
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| [»] scaffold0137 (1 HSPs) |
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Alignment Details
Target: scaffold0137 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: scaffold0137
Description:
Target: scaffold0137; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 3 - 349
Target Start/End: Original strand, 39296 - 39642
Alignment:
| Q |
3 |
atcaaaagaaatactaatgtgacatcacgattaagagatggcttgggcccatcagtagctcacgtttgtgcctatcatggtcagccagattgtatgcgag |
102 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39296 |
atcaaaagaaatgctaatgtgacatcacgattaagagatggcttgggcccatcagtagctcacgtttgtgcctatcatggtcagccagattgtatgcgag |
39395 |
T |
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| Q |
103 |
tgcgttttcactaaattttacttaatgattccttttctttattgatgctatattcacctaaattatttggggacaaataacaggagttacttttagctgg |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39396 |
tgcgttttcactaaattttacttaatgattccttttctttattgatgctatattcacctaaattatttggggacaaataacaggagttacttttagctgg |
39495 |
T |
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| Q |
203 |
agctgatcccaatgcagtggatgacgaaggtgaatctgtacttcatagggcaattgccaagaagttcacagactgtgctcttgtgatagtggaaaatgga |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39496 |
agctgatcccaatgcagtggatgacgaaggtgaatctgtacttcatagggcaattgccaagaagttcacagactgtgctcttgtgatagtggaaaatgga |
39595 |
T |
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| Q |
303 |
ggctgtagatcaatggccatctcgaattcaaaaaatttgacgtgagt |
349 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39596 |
ggctgtagatcaatggccatctcgaattcaaaaaatttgacgtgagt |
39642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 3 - 349
Target Start/End: Original strand, 3927143 - 3927489
Alignment:
| Q |
3 |
atcaaaagaaatactaatgtgacatcacgattaagagatggcttgggcccatcagtagctcacgtttgtgcctatcatggtcagccagattgtatgcgag |
102 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3927143 |
atcaaaagaaatgctaatgtgacatcacgattaagagatggcttgggcccatcagtagctcacgtttgtgcctatcatggtcagccagattgtatgcgag |
3927242 |
T |
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| Q |
103 |
tgcgttttcactaaattttacttaatgattccttttctttattgatgctatattcacctaaattatttggggacaaataacaggagttacttttagctgg |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3927243 |
tgcgttttcactaaattttacttaatgattccttttctttattgatgctatattcacctaaattatttggggacaaataacaggagttacttttagctgg |
3927342 |
T |
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| Q |
203 |
agctgatcccaatgcagtggatgacgaaggtgaatctgtacttcatagggcaattgccaagaagttcacagactgtgctcttgtgatagtggaaaatgga |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3927343 |
agctgatcccaatgcagtggatgacgaaggtgaatctgtacttcatagggcaattgccaagaagttcacagactgtgctcttgtgatagtggaaaatgga |
3927442 |
T |
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| Q |
303 |
ggctgtagatcaatggccatctcgaattcaaaaaatttgacgtgagt |
349 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3927443 |
ggctgtagatcaatggccatctcgaattcaaaaaatttgacgtgagt |
3927489 |
T |
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