View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13632_high_13 (Length: 340)
Name: NF13632_high_13
Description: NF13632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13632_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 159; Significance: 1e-84; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 24 - 323
Target Start/End: Complemental strand, 12185431 - 12185143
Alignment:
| Q |
24 |
tgaagaactcttgcatattggatttggcggagacctcatggtataaaattctgttgcagcttatgtaaggacaagcaggcaataattaaactgattgaac |
123 |
Q |
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| T |
12185431 |
tgaagaactcttgcatattggatttggcggagacctcatgttataaaattctgttgcagcttatgtaaagacatgcaggcaataattgaaccgattgaac |
12185332 |
T |
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| Q |
124 |
tagttgaatcatgacttagatgtctcaccgattcaatccctagtcggnnnnnnnnnnnnnaatattataagcaattgttaggctttttaggagctaatgt |
223 |
Q |
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| T |
12185331 |
tagttgaatcatgacttagatgtctcatcgattcaatttctagtcggtttttctttttctaatgttataagcaattgttaggctt-----------atgt |
12185243 |
T |
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| Q |
224 |
catctctataagttggtctcagcttatgttcttaagctctctgcaatagcttatgaaaagaatgtaaatgtaagctttggattgtaacttgtgctgttca |
323 |
Q |
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||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
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| T |
12185242 |
catctctataagttggtttcagcttatgttcttcagctctcaataatagcttatgaaaagaatgtaaatgtgagctttggattgtaactggtgctgttca |
12185143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 24 - 323
Target Start/End: Complemental strand, 12429859 - 12429571
Alignment:
| Q |
24 |
tgaagaactcttgcatattggatttggcggagacctcatggtataaaattctgttgcagcttatgtaaggacaagcaggcaataattaaactgattgaac |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||| ||| |||||||| |
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| T |
12429859 |
tgaagaactcttgcatattggatttggcggagacctcatgttataaaattctgttgcagcttatgtaaagacatgcaggcaataattgaaccgattgaac |
12429760 |
T |
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| Q |
124 |
tagttgaatcatgacttagatgtctcaccgattcaatccctagtcggnnnnnnnnnnnnnaatattataagcaattgttaggctttttaggagctaatgt |
223 |
Q |
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| T |
12429759 |
tagttgaatcatgacttagatgtctcatcgattcaatttctagtcggtttttctttttctaatgttataagcaattgttaggctt-----------atgt |
12429671 |
T |
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| Q |
224 |
catctctataagttggtctcagcttatgttcttaagctctctgcaatagcttatgaaaagaatgtaaatgtaagctttggattgtaacttgtgctgttca |
323 |
Q |
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||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
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| T |
12429670 |
catctctataagttggtttcagcttatgttcttcagctctcaataatagcttatgaaaagaatgtaaatgtgagctttggattgtaactggtgctgttca |
12429571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 24 - 115
Target Start/End: Complemental strand, 12173967 - 12173876
Alignment:
| Q |
24 |
tgaagaactcttgcatattggatttggcggagacctcatggtataaaattctgttgcagcttatgtaaggacaagcaggcaataattaaact |
115 |
Q |
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| T |
12173967 |
tgaagaactcttgcatattggatttggcggagacctcatgttataaaattctgttgcagcttatgtaaagacatgcagtcaataattgaact |
12173876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 24 - 115
Target Start/End: Complemental strand, 12418395 - 12418304
Alignment:
| Q |
24 |
tgaagaactcttgcatattggatttggcggagacctcatggtataaaattctgttgcagcttatgtaaggacaagcaggcaataattaaact |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||| |||||||| |||| |
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| T |
12418395 |
tgaagaactcttgcatattggatttggcggagacctcatgttataaaattctgttgcagcttatgtaaagacatgcagtcaataattgaact |
12418304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 322
Target Start/End: Original strand, 5604558 - 5604600
Alignment:
| Q |
280 |
aaagaatgtaaatgtaagctttggattgtaacttgtgctgttc |
322 |
Q |
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| T |
5604558 |
aaagaatgtaaatgtaagctttggagtgtaactcgtgctgttc |
5604600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 322
Target Start/End: Complemental strand, 5630812 - 5630770
Alignment:
| Q |
280 |
aaagaatgtaaatgtaagctttggattgtaacttgtgctgttc |
322 |
Q |
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| T |
5630812 |
aaagaatgtaaatgtaagctttggagtgtaactcgtgctgttc |
5630770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 280 - 323
Target Start/End: Original strand, 6307557 - 6307600
Alignment:
| Q |
280 |
aaagaatgtaaatgtaagctttggattgtaacttgtgctgttca |
323 |
Q |
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||||||| |||||||||||||||||||| |||| |||||||||| |
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| T |
6307557 |
aaagaatctaaatgtaagctttggattgcaactagtgctgttca |
6307600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 280 - 323
Target Start/End: Original strand, 9862186 - 9862229
Alignment:
| Q |
280 |
aaagaatgtaaatgtaagctttggattgtaacttgtgctgttca |
323 |
Q |
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||||||| ||||||||||||||||||||||||| || ||||||| |
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| T |
9862186 |
aaagaatctaaatgtaagctttggattgtaactagttctgttca |
9862229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 280 - 323
Target Start/End: Complemental strand, 13168017 - 13167974
Alignment:
| Q |
280 |
aaagaatgtaaatgtaagctttggattgtaacttgtgctgttca |
323 |
Q |
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||||||| ||||||||||||||||||||||||| ||| |||||| |
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| T |
13168017 |
aaagaatctaaatgtaagctttggattgtaactagtgttgttca |
13167974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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