View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13632_high_14 (Length: 327)
Name: NF13632_high_14
Description: NF13632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13632_high_14 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 16 - 315
Target Start/End: Original strand, 31137541 - 31137840
Alignment:
| Q |
16 |
caaatatatgattatatttccattcacttagtaatatatgtatacatttaccgagccaaaaagaaattcaaatcaagatggtttcataaatgtgaattta |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31137541 |
caaatatatgattatatttccattcacttagtaatatatgtatacatttaccgagccaaaaagaaattcaaatcaagatggtttcataaatgtgaattta |
31137640 |
T |
|
| Q |
116 |
ttattttcacgtgatacaagattaccagaattgttttggtcaattagggatggatagtttgtggttcaagaatttctatccatttgatcatttcaaattt |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
31137641 |
ttattttcacgtgatacaagattaccagaattgttttggtcaattagggatggatagtttgtggttcaagaatttctatccatatgatcatttcaaattt |
31137740 |
T |
|
| Q |
216 |
caaatatgtaattaaaaatgtgtacatgcatatatgtttttataagatttataagccagatactacaaattcaggaatggatcttcttcgtttcttctct |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31137741 |
caaatatgtaattaaaaatgtgtacatgcatatatgtttttataagatttataaaccagatactacaaattcaggaatggatcttcttcgtttcttctct |
31137840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University