View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13632_high_19 (Length: 245)
Name: NF13632_high_19
Description: NF13632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13632_high_19 |
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Alignment Details
Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 12 - 226
Target Start/End: Complemental strand, 32013273 - 32013059
Alignment:
| Q |
12 |
tcatcaataaagattatagaaggcgcacacttttttgcagcggcaaaaagatctctcaccctatgtgcaccaacaccaacaatcgtctcttcaaattcac |
111 |
Q |
| |
|
||||||| |||||||||| ||||||||| |||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
32013273 |
tcatcaagaaagattatacaaggcgcacgcttttttgcagcagcaaaaagatttctcaccctttgtgcaccaacaccaacaatcgtctcttcaaattcac |
32013174 |
T |
|
| Q |
112 |
gtccattacttgagaagaaaggaacgccagcctcttcagcaatagctctcgccaacattgttttaccggtgccagtcgggccaacaagcaaaactccttt |
211 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||| ||||| |
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|
| T |
32013173 |
gtccattggttgagaagaaaggaaccccagcctctccagcaatagcgctcgccaacattgttttaccggtgccaggcgggccataaagcaaaacaccttt |
32013074 |
T |
|
| Q |
212 |
tgggagtttgccacc |
226 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
32013073 |
tgggagtttgccacc |
32013059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 12 - 226
Target Start/End: Complemental strand, 32024682 - 32024468
Alignment:
| Q |
12 |
tcatcaataaagattatagaaggcgcacacttttttgcagcggcaaaaagatctctcaccctatgtgcaccaacaccaacaatcgtctcttcaaattcac |
111 |
Q |
| |
|
|||||||||||||||||| ||||| | ||||||||||| |||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||| |
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|
| T |
32024682 |
tcatcaataaagattatacaaggcaaccgtttttttgcagcagcaaaaagatctctcaccctttgtgcaccaacaccaacaaccatctcttcaaattcac |
32024583 |
T |
|
| Q |
112 |
gtccattacttgagaagaaaggaacgccagcctcttcagcaatagctctcgccaacattgttttaccggtgccagtcgggccaacaagcaaaactccttt |
211 |
Q |
| |
|
||||| | |||||||||||||||| | || ||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||| ||||| |
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|
| T |
32024582 |
gtccactggttgagaagaaaggaacctcggcttctccagcaatagctctcgccaacattgttttaccagtgccaggcgggccaacaatcaaaataccttt |
32024483 |
T |
|
| Q |
212 |
tgggagtttgccacc |
226 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
32024482 |
tgggagtttgccacc |
32024468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 12 - 136
Target Start/End: Complemental strand, 31793151 - 31793027
Alignment:
| Q |
12 |
tcatcaataaagattatagaaggcgcacacttttttgcagcggcaaaaagatctctcaccctatgtgcaccaacaccaacaatcgtctcttcaaattcac |
111 |
Q |
| |
|
|||||||||||||||||| || | |||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |
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|
| T |
31793151 |
tcatcaataaagattatacaatgtgcacgtttttttgcagcagcaaaaagatctctcaccctttgtgcaccaacaccaacaatcgcctcttcaaattcac |
31793052 |
T |
|
| Q |
112 |
gtccattacttgagaagaaaggaac |
136 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
31793051 |
gtccattacttgagaagaaaggaac |
31793027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 133 - 226
Target Start/End: Complemental strand, 31792588 - 31792495
Alignment:
| Q |
133 |
gaacgccagcctcttcagcaatagctctcgccaacattgttttaccggtgccagtcgggccaacaagcaaaactccttttgggagtttgccacc |
226 |
Q |
| |
|
|||| ||||||||| || |||||| ||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||| |||||| |
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|
| T |
31792588 |
gaaccccagcctctccaacaataggtctcgccaacattgttttagcggtgccaggcggcccaacaagcaaaactccttttgggagttcgccacc |
31792495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 136; Significance: 5e-71; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 15 - 226
Target Start/End: Original strand, 48113272 - 48113483
Alignment:
| Q |
15 |
tcaataaagattatagaaggcgcacacttttttgcagcggcaaaaagatctctcaccctatgtgcaccaacaccaacaatcgtctcttcaaattcacgtc |
114 |
Q |
| |
|
||||||||||||||| |||||| | |||||||||||| |||||||||||||||||||| |||||||||||||||||| | ||||||||||||||| || |
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|
| T |
48113272 |
tcaataaagattatacaaggcgaccgcttttttgcagcagcaaaaagatctctcacccttcgtgcaccaacaccaacaaacatctcttcaaattcacttc |
48113371 |
T |
|
| Q |
115 |
cattacttgagaagaaaggaacgccagcctcttcagcaatagctctcgccaacattgttttaccggtgccagtcgggccaacaagcaaaactccttttgg |
214 |
Q |
| |
|
|| | | ||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||| |||||||| |
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|
| T |
48113372 |
cactgcatgagaagaaaggaaccccagcctctccagcaatagctcttgccaacattgttttaccagtgccaggcgggccaacaagcaaaacaccttttgg |
48113471 |
T |
|
| Q |
215 |
gagtttgccacc |
226 |
Q |
| |
|
|||||||||||| |
|
|
| T |
48113472 |
gagtttgccacc |
48113483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 12 - 226
Target Start/End: Original strand, 48132173 - 48132387
Alignment:
| Q |
12 |
tcatcaataaagattatagaaggcgcacacttttttgcagcggcaaaaagatctctcaccctatgtgcaccaacaccaacaatcgtctcttcaaattcac |
111 |
Q |
| |
|
|||||||||||||||||| |||| | | |||||||||||| ||||||||||||| |||||| |||||||||||||||||| | ||||||||||||||| |
|
|
| T |
48132173 |
tcatcaataaagattatacaaggagaccgcttttttgcagcagcaaaaagatctcgcacccttcgtgcaccaacaccaacaaacatctcttcaaattcac |
48132272 |
T |
|
| Q |
112 |
gtccattacttgagaagaaaggaacgccagcctcttcagcaatagctctcgccaacattgttttaccggtgccagtcgggccaacaagcaaaactccttt |
211 |
Q |
| |
|
|||| | | ||||||||||||||| ||||||||| ||||||||||||| |||| |||||||||||| ||||||| |||||||||||||||||| ||||| |
|
|
| T |
48132273 |
ttccactgcatgagaagaaaggaaccccagcctctccagcaatagctcttgccagcattgttttaccagtgccaggcgggccaacaagcaaaacaccttt |
48132372 |
T |
|
| Q |
212 |
tgggagtttgccacc |
226 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
48132373 |
tgggagtttgccacc |
48132387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 12 - 226
Target Start/End: Complemental strand, 48141689 - 48141475
Alignment:
| Q |
12 |
tcatcaataaagattatagaaggcgcacacttttttgcagcggcaaaaagatctctcaccctatgtgcaccaacaccaacaatcgtctcttcaaattcac |
111 |
Q |
| |
|
|||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||| ||||||||||| | | | | ||||||||||||||| |
|
|
| T |
48141689 |
tcatcaataaagattatacaaggtgacttcttttttgcagcggcaaaaagatctctcacccttcgtgcaccaacatccattagcatctcttcaaattcac |
48141590 |
T |
|
| Q |
112 |
gtccattacttgagaagaaaggaacgccagcctcttcagcaatagctctcgccaacattgttttaccggtgccagtcgggccaacaagcaaaactccttt |
211 |
Q |
| |
|
|||| | || |||||||||||| |||||||| ||||||||||||| || | ||||||||| || |||||| ||||||| ||||||||| ||||| |
|
|
| T |
48141589 |
ttccactgatttggaagaaaggaacatcagcctctccagcaatagctcttgctagcattgttttgccaatgccaggcgggccagaaagcaaaacaccttt |
48141490 |
T |
|
| Q |
212 |
tgggagtttgccacc |
226 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
48141489 |
agggagtttgccacc |
48141475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 12 - 226
Target Start/End: Original strand, 25242620 - 25242833
Alignment:
| Q |
12 |
tcatcaataaagattatagaaggcgcacacttttttgcagcggcaaaaagatctctcaccctatgtgcaccaacaccaacaatcgtctcttcaaattcac |
111 |
Q |
| |
|
|||||||||||||||||| |||| | | |||||||||||| ||||||||||||| |||||| |||||||||||||||||| | ||||||||||||||| |
|
|
| T |
25242620 |
tcatcaataaagattatacaaggagaccgcttttttgcagcagcaaaaagatctcgcacccttcgtgcaccaacaccaacaaacatctcttcaaattcac |
25242719 |
T |
|
| Q |
112 |
gtccattacttgagaagaaaggaacgccagcctcttcagcaatagctctcgccaacattgttttaccggtgccagtcgggccaacaagcaaaactccttt |
211 |
Q |
| |
|
|||| | | | ||||||||||||| ||||||||| ||||||||||||| |||| |||||||||||| ||||||| ||||| |||||||||||| ||||| |
|
|
| T |
25242720 |
ttccactgcat-agaagaaaggaaccccagcctctccagcaatagctcttgccagcattgttttaccagtgccaggcgggctaacaagcaaaacaccttt |
25242818 |
T |
|
| Q |
212 |
tgggagtttgccacc |
226 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
25242819 |
tgggagtttgccacc |
25242833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 12 - 226
Target Start/End: Complemental strand, 25254261 - 25254047
Alignment:
| Q |
12 |
tcatcaataaagattatagaaggcgcacacttttttgcagcggcaaaaagatctctcaccctatgtgcaccaacaccaacaatcgtctcttcaaattcac |
111 |
Q |
| |
|
|||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||| ||||||||||| | | | | ||||||||||||||| |
|
|
| T |
25254261 |
tcatcaataaagattatacaaggtgacttcttttttgcagcggcaaaaagatctctcacccttcgtgcaccaacaaccattagcatctcttcaaattcac |
25254162 |
T |
|
| Q |
112 |
gtccattacttgagaagaaaggaacgccagcctcttcagcaatagctctcgccaacattgttttaccggtgccagtcgggccaacaagcaaaactccttt |
211 |
Q |
| |
|
|||| | || |||||||||||| |||||||| ||||||||||||| || | ||||||||| || |||||| ||||||| ||||||||| ||||| |
|
|
| T |
25254161 |
ttccactgatttggaagaaaggaacatcagcctctccagcaatagctcttgctagcattgttttgccaatgccaggcgggccagaaagcaaaacaccttt |
25254062 |
T |
|
| Q |
212 |
tgggagtttgccacc |
226 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
25254061 |
agggagtttgccacc |
25254047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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