View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13632_high_2 (Length: 700)
Name: NF13632_high_2
Description: NF13632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13632_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 660; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 660; E-Value: 0
Query Start/End: Original strand, 1 - 684
Target Start/End: Complemental strand, 12508709 - 12508026
Alignment:
| Q |
1 |
tagatgggtagctgagatcaaagactcatctcaacatgtaagattatggcttggaaactatgacacaccagaagaagctgctcgagcttacgacgaagct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12508709 |
tagatgggtagctgagatcaaagactcatctcaacatgtaagattatggcttggaacctatgacacaccagaagaagctgctcgagcttacgacgaagct |
12508610 |
T |
|
| Q |
101 |
gctcgagctttacgcggagaaaatgctcgaaccaacttcgccctagcagtatccacagacggtacaacaccatgcagtgatgatcaaggattagtatcat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12508609 |
gctcgagctttacgcggagaaaatgctcgaaccaacttcgccctagcagtatcaacagacggtacaacaccatgcagtgatgatcaaggattagtatcat |
12508510 |
T |
|
| Q |
201 |
caccacaaacaaatgaagcaaaaaacagtttaacttttgcttcattgaaagcaaaattgagcaagaatcttcaaagtattatggcaagaacaagtgatca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12508509 |
caccacaaacaaatgaagcaaaaaacagtttaacttttgcttcattgaaagcaaaattgagcaagaatcttcaaagtattatggcaagaacaagtgatca |
12508410 |
T |
|
| Q |
301 |
tcataacaacaagttttcaaagagtagagtgagtgatcattttacttttgctagcatattcaatcgtaggaatcataattacaatcaaatatctgctttg |
400 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
12508409 |
taataacaacaagttttcaaagagtagagtgagtgatcattttacttttgctagcatattcaaccgtaggaatcataattacaatcaaatatctgctttg |
12508310 |
T |
|
| Q |
401 |
gatatgaagaacattgagaaagttgtgcagcctagtatcattgttccctctaatgatggtgacccttctagggtttctgattgtagctctgaatggtttg |
500 |
Q |
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| T |
12508309 |
gatatgaagaacatagagaaagttgtgcagcctagtatcattgttccctctaatgatggtgacccttctagggtttctgattgtagctctgaatggtttg |
12508210 |
T |
|
| Q |
501 |
gatttcagaatctagggttagattctgatggatctgatataggagagattaataataatgctaatattaatgttggtgatcaaggttttttggaacaact |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12508209 |
gatttcagaatctagggttagattctgatggatctgatataggagagattaacaataatgctaatattaatgttggtgatcaaggttttttggaacaact |
12508110 |
T |
|
| Q |
601 |
catggggtggattgatgatgatagttctgatatttgtgaaggttcaagtagtaagaggtttaaggtatcttcttctgttcttgt |
684 |
Q |
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| T |
12508109 |
catggggtggattgatgatgatagttctgatatttgtgaaggttcaagtagtaagaggtttaaggtatcttcttctgttcttgt |
12508026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 155; Significance: 6e-82; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 465 - 684
Target Start/End: Complemental strand, 21279607 - 21279390
Alignment:
| Q |
465 |
cttctagggtttctgattgtagctctgaatggtttggatttcagaatctagggttagattctgatggatctgatataggagagattaataataatgctaa |
564 |
Q |
| |
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||||||| |||||||||||||| |||||||||||||||| ||| ||| ||||||||||| |||||||| |||||||||||||||||||| ||||||||| |
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| T |
21279607 |
cttctagtgtttctgattgtagttctgaatggtttggatatcataataaagggttagattatgatggatgtgatataggagagattaatattaatgctaa |
21279508 |
T |
|
| Q |
565 |
tattaatgttggtgatcaaggtt-ttttggaacaactcatggggtggattgatgatgatagttctgatatttgtgaaggttcaagtagtaagaggtttaa |
663 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
21279507 |
tattaatgttggtgatcaaggtttttttggaacaactcatgggatggat---tgatgatagttctgatatttgtgaaggttcaagtagtaaaaggtttaa |
21279411 |
T |
|
| Q |
664 |
ggtatcttcttctgttcttgt |
684 |
Q |
| |
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||||||||||||||||||||| |
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| T |
21279410 |
ggtatcttcttctgttcttgt |
21279390 |
T |
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