View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13632_high_23 (Length: 236)
Name: NF13632_high_23
Description: NF13632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13632_high_23 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 18 - 147
Target Start/End: Original strand, 298637 - 298766
Alignment:
| Q |
18 |
caaagggacaaaatcacaccatgtgccaaaagtagaattaagcatactttaaatgaagtgcaaagccaaggcaatatatatcccacatagtatcagattt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
298637 |
caaagggacaaaatcacaccatgtgccaaaagtagaattaagcatactttaaatgaagtgcaaagccaagccaatatatatcccacatagtatcagattt |
298736 |
T |
|
| Q |
118 |
aggtgtgttacacgggacaaattaggcatt |
147 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
298737 |
aggtgtgttacacgggacaaattaggcatt |
298766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University