View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13632_high_8 (Length: 408)
Name: NF13632_high_8
Description: NF13632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13632_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 109 - 228
Target Start/End: Original strand, 27841525 - 27841645
Alignment:
| Q |
109 |
tttgaacatggaaatggagacggtgcaacaattatttgaccaatttccatatgaaaatgc-agtaatcccgttctttattcacatcccttttcattctac |
207 |
Q |
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| T |
27841525 |
tttgaacatggaaagggagacggtgcaacaattatttgaccaatttccatatgaaaatgctagtaatcccattctttattcacatcccttttcattcttc |
27841624 |
T |
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| Q |
208 |
aactcaattgttttgacaaaa |
228 |
Q |
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| T |
27841625 |
aattcaattgttttgacaaaa |
27841645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 8e-31; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 109 - 224
Target Start/End: Complemental strand, 48189365 - 48189250
Alignment:
| Q |
109 |
tttgaacatggaaatggagacggtgcaacaattatttgaccaatttccatatgaaaatgc-agtaatcccgttctttattcacatcccttttcattctac |
207 |
Q |
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| T |
48189365 |
tttgaacatggaaagggaaacggtgccacaattatttgaccaatttccataagaaaatgctagtaat-ccgttctttgttcacatcccttttcattcttc |
48189267 |
T |
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| Q |
208 |
aactcaattgttttgac |
224 |
Q |
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| T |
48189266 |
aatttaattgttttgac |
48189250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 244 - 305
Target Start/End: Complemental strand, 39434647 - 39434585
Alignment:
| Q |
244 |
ctaattaaattactcaattaatccc-attctacattcaaaattgaaaaccaataaatcgaaag |
305 |
Q |
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| T |
39434647 |
ctaattaaactaatcaattaacccccattccacattcaaaatcgaaaaccaagaaatcgaaag |
39434585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 95
Target Start/End: Complemental strand, 39434681 - 39434640
Alignment:
| Q |
54 |
caccactccacttttcaaaccaaattcaaactcactaattaa |
95 |
Q |
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| T |
39434681 |
caccactccatttttcaaaccaaattcaaacccgctaattaa |
39434640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 109 - 176
Target Start/End: Complemental strand, 2741138 - 2741070
Alignment:
| Q |
109 |
tttgaacatggaaatggagacggtgcaacaattatttgaccaatttccatatgaaaatgc-agtaatcc |
176 |
Q |
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|||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
2741138 |
tttgaacatggaaagggatacggtgcaacaattatttgaccaatttccatatgaatatgctagtaatcc |
2741070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 109 - 168
Target Start/End: Original strand, 38155058 - 38155117
Alignment:
| Q |
109 |
tttgaacatggaaatggagacggtgcaacaattatttgaccaatttccatatgaaaatgc |
168 |
Q |
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|||||||||||||| ||| |||||||||||| |||| ||||||| |||||| ||||||| |
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| T |
38155058 |
tttgaacatggaaaaggaaacggtgcaacaagtattcgaccaatgtccatacaaaaatgc |
38155117 |
T |
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