View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13632_high_9 (Length: 369)

Name: NF13632_high_9
Description: NF13632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13632_high_9
NF13632_high_9
[»] chr7 (6 HSPs)
chr7 (130-250)||(15491233-15491353)
chr7 (1-117)||(15490596-15490712)
chr7 (1-122)||(15432241-15432361)
chr7 (220-333)||(15567974-15568086)
chr7 (130-175)||(15567929-15567974)
chr7 (36-105)||(6081564-6081637)
[»] chr5 (2 HSPs)
chr5 (36-105)||(29527028-29527101)
chr5 (43-109)||(39702591-39702661)
[»] chr1 (2 HSPs)
chr1 (36-105)||(10583063-10583136)
chr1 (36-105)||(49122491-49122564)
[»] scaffold1195 (1 HSPs)
scaffold1195 (1-35)||(1343-1377)
[»] chr6 (1 HSPs)
chr6 (36-105)||(18132766-18132839)


Alignment Details
Target: chr7 (Bit Score: 109; Significance: 9e-55; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 130 - 250
Target Start/End: Original strand, 15491233 - 15491353
Alignment:
Q  130 taattgcaacatactcaaaggtggtgattcagaaaggtgatccatatatagataaatccaattctgattctatagacaaaagttcaaaagagctaacaca 229  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  15491233 taattgcaacatactcaaaggtggtgattcagaaaggtgaaccatatatagataaatccaattctgattctatagtcaaaagttcaaaagagctaacaca 15491332  T
Q  230 aatcaataacatatagaatcc 250  Q
    ||||||| |||||||||||||    
T  15491333 aatcaattacatatagaatcc 15491353  T

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Target: chr7; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 15490596 - 15490712
Alignment:
Q  1 tgcctatcggtggttgatttgtgtggagaaacattaagttgttggaggcggtgaaattcttgcgaaaccgtgcatatggtggcagcggtggagttgatgc 100  Q
    |||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||     
T  15490596 tgcctatcggtggttgatttgtgtcgagaaacattaagtttctggaggcggtgaaattcttgtgaaactgtgcatatggtggcagcggtggagttgatgt 15490695  T
Q  101 catctacatatgctagt 117  Q
    |||||||||||||||||    
T  15490696 catctacatatgctagt 15490712  T

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Target: chr7; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 15432241 - 15432361
Alignment:
Q  1 tgcctatcggtggttgatttgtgtggagaaacattaagttgttggaggcggtgaaattcttgcgaaaccgtgcatatggtggcagcggtggagttgatgc 100  Q
    |||||||||||||||||||||| | ||||| |||||||||| ||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||    
T  15432241 tgcctatcggtggttgatttgt-tcgagaatcattaagttgctggaggcggtgaaattcttgcgaaaacgtgcatacggtggcagctgtggagttgatgc 15432339  T
Q  101 catctacatatgctagtcagcg 122  Q
    ||||||||||||||||| ||||    
T  15432340 catctacatatgctagttagcg 15432361  T

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Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 220 - 333
Target Start/End: Original strand, 15567974 - 15568086
Alignment:
Q  220 agctaacacaaatcaataacatatagaatcccaattttctccaagacattaaacatatttgtgttcttccagccaacaaaattttttattgcaatgtgtc 319  Q
    ||||||||||| | |||||||||||| |||  |||||||||||||||| |||||| | || ||||||||||||| | ||||  | |||| ||||||||||    
T  15567974 agctaacacaagtaaataacatatagtatcaaaattttctccaagacaataaacaga-ttatgttcttccagccgataaaaaatgttatcgcaatgtgtc 15568072  T
Q  320 cataacaagaagca 333  Q
    ||||||||||||||    
T  15568073 cataacaagaagca 15568086  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 130 - 175
Target Start/End: Original strand, 15567929 - 15567974
Alignment:
Q  130 taattgcaacatactcaaaggtggtgattcagaaaggtgatccata 175  Q
    ||||||||||||||||||||||| ||||| ||||||||| ||||||    
T  15567929 taattgcaacatactcaaaggtgatgattgagaaaggtggtccata 15567974  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 105
Target Start/End: Original strand, 6081564 - 6081637
Alignment:
Q  36 aagttgttggaggcggtgaaattcttgcgaaaccgtgca----tatggtggcagcggtggagttgatgccatct 105  Q
    |||||| ||||||||||||||  |||||||||||||||     ||||||||||| |||||||| ||||||||||    
T  6081564 aagttgctggaggcggtgaaagccttgcgaaaccgtgctctcgtatggtggcagtggtggagtcgatgccatct 6081637  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 36 - 105
Target Start/End: Complemental strand, 29527101 - 29527028
Alignment:
Q  36 aagttgttggaggcggtgaaattcttgcgaaaccgtgca----tatggtggcagcggtggagttgatgccatct 105  Q
    |||||| ||||||||||||||  |||||||||||||||     ||||||||||| |||||||||||||||||||    
T  29527101 aagttgctggaggcggtgaaagccttgcgaaaccgtgctctcgtatggtggcagtggtggagttgatgccatct 29527028  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 109
Target Start/End: Complemental strand, 39702661 - 39702591
Alignment:
Q  43 tggaggcggtgaaattcttgcgaaaccgtgc----atatggtggcagcggtggagttgatgccatctacat 109  Q
    |||||||||||||| | ||| ||||||||||    ||||||||| || |||||||| ||||||||||||||    
T  39702661 tggaggcggtgaaagtattgtgaaaccgtgctctcatatggtggaagtggtggagtcgatgccatctacat 39702591  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 105
Target Start/End: Original strand, 10583063 - 10583136
Alignment:
Q  36 aagttgttggaggcggtgaaattcttgcgaaaccgtgca----tatggtggcagcggtggagttgatgccatct 105  Q
    |||||| ||||||||||||||  |||||||||||||||     ||||||||||| |||||||| ||||||||||    
T  10583063 aagttgctggaggcggtgaaagccttgcgaaaccgtgctctcgtatggtggcagtggtggagtcgatgccatct 10583136  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 105
Target Start/End: Original strand, 49122491 - 49122564
Alignment:
Q  36 aagttgttggaggcggtgaaattcttgcgaaaccgtgca----tatggtggcagcggtggagttgatgccatct 105  Q
    |||||| ||||||||||||||  |||||||||||||||     ||||||||||| |||||||| ||||||||||    
T  49122491 aagttgctggaggcggtgaaagccttgcgaaaccgtgctctcgtatggtggcagtggtggagtcgatgccatct 49122564  T

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Target: scaffold1195 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1195
Description:

Target: scaffold1195; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 1343 - 1377
Alignment:
Q  1 tgcctatcggtggttgatttgtgtggagaaacatt 35  Q
    |||||||||||||||||||||||||||||| ||||    
T  1343 tgcctatcggtggttgatttgtgtggagaagcatt 1377  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 105
Target Start/End: Complemental strand, 18132839 - 18132766
Alignment:
Q  36 aagttgttggaggcggtgaaattcttgcgaaaccgtgca----tatggtggcagcggtggagttgatgccatct 105  Q
    |||||| ||||||||||||||  |||||||||||||||     ||||||||||| |||||||| |||| |||||    
T  18132839 aagttgctggaggcggtgaaagccttgcgaaaccgtgctctcgtatggtggcagtggtggagtcgatggcatct 18132766  T

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