View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13632_low_10 (Length: 358)
Name: NF13632_low_10
Description: NF13632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13632_low_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 159; Significance: 1e-84; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 18 - 193
Target Start/End: Complemental strand, 25352424 - 25352245
Alignment:
| Q |
18 |
gatatgttggcgaaaaacacatttgtggagccaatttctgctatgtaccatgtaccaagtgctgcttaccctaacccgcctgtaccatcttatgtgagtc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
25352424 |
gatatgttggcgaaaaacacatttgtggagccaatttctgctatgtaccatgtaccaagtgctgctgaccctaacccgcctgtaccatcttatgtgagtc |
25352325 |
T |
|
| Q |
118 |
ttcatatcttcattttatttcaattcttagttactta----ataatgtactttctgtaacacatctcttggatattgtag |
193 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25352324 |
ttcatatcttcattttatttcaattcttagttacttaatatataatgtactttctgtaacacatctcttggatattgtag |
25352245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 227 - 353
Target Start/End: Complemental strand, 25352211 - 25352085
Alignment:
| Q |
227 |
ttggatttaaagaaggtaaggaggactagtaatagattgagaaccttggccttnnnnnnngtatataatggtcctggaagagatgcaacctgcccaattg |
326 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25352211 |
ttggatttatagaaggtaaggaggactagtaatagattgagaaccttggccttcaaaaaagtatataatggtcctggaagagatgcaacctgcccaattg |
25352112 |
T |
|
| Q |
327 |
tgattaacgatgatgattatgatgatg |
353 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
25352111 |
tgattaacgatgatgattatgatgatg |
25352085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 19 - 193
Target Start/End: Complemental strand, 25357088 - 25356914
Alignment:
| Q |
19 |
atatgttggcgaaaaacacatttgtggagccaatttctgctatgtaccatgtaccaagtgctgcttaccctaacccgcctgtaccatcttatgtgagtct |
118 |
Q |
| |
|
|||||| ||| |||||||| ||||||||||| ||||||| || ||| |||||||| ||||| |||||||||| | ||||||||||||||||||| |
|
|
| T |
25357088 |
atatgtcggctaaaaacacgtttgtggagccgatttctgtagtgaaccttgtaccaacaactgctgaccctaaccc---tttaccatcttatgtgagtct |
25356992 |
T |
|
| Q |
119 |
tcatatcttcattttatttcaattc---ttagttacttaataatgtactttctgtaacacatctcttggatattgtag |
193 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||| |||||||||| |||||| |
|
|
| T |
25356991 |
tcatatcttcattttatttcaattcttattagttacttaataatggactttatgtaacacctctcttggatgttgtag |
25356914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 227 - 353
Target Start/End: Complemental strand, 25349672 - 25349547
Alignment:
| Q |
227 |
ttggatttaaagaaggtaaggaggactagtaatagattgagaaccttggccttnnnnnnngtatataatggtcctggaagagatgcaacctgcccaattg |
326 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||| ||||| |||| ||||||||||| | ||||||| |
|
|
| T |
25349672 |
ttggatttaaagatggtgaggaggactagtaatagattgagaaccttggccttcaaaaaagtatatgatggt-ctgggagagatgcaactagtccaattg |
25349574 |
T |
|
| Q |
327 |
tgattaacgatgatgattatgatgatg |
353 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
25349573 |
tgattaacgatgatgattatgatgatg |
25349547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 100 - 191
Target Start/End: Complemental strand, 25349805 - 25349711
Alignment:
| Q |
100 |
taccatcttatgtgagtcttcatatcttcattttatttcaattc---ttagttacttaataatgtactttctgtaacacatctcttggatattgt |
191 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||| | ||||||||||||| |
|
|
| T |
25349805 |
taccatcttatgtgagtcttcatatcttcattttatttcaattcttattagttacttaataatggactttatgtaacacctttcttggatattgt |
25349711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 227 - 353
Target Start/End: Complemental strand, 25356880 - 25356754
Alignment:
| Q |
227 |
ttggatttaaagaaggtaaggaggactagtaatagattgagaaccttggccttnnnnnnngtatataatggtcctggaagagatgcaacctgcccaattg |
326 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||| | ||||||| || | |||||| |
|
|
| T |
25356880 |
ttggatttaaaggtggtgaggaggactagtaatagattgagaaccttggccttcaaaaaagtatatgatggtcctgggaaagatgcagccagtccaattt |
25356781 |
T |
|
| Q |
327 |
tgattaacgatgatgattatgatgatg |
353 |
Q |
| |
|
|||||||||||||||| |||||||||| |
|
|
| T |
25356780 |
tgattaacgatgatgaatatgatgatg |
25356754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 96 - 193
Target Start/End: Complemental strand, 25361677 - 25361580
Alignment:
| Q |
96 |
cctgtaccatcttatgtgagtcttcatatcttcattttatttcaattcttagttacttaataatgtactttctgtaacacatctcttggatattgtag |
193 |
Q |
| |
|
|||||||||||| ||||||| || | |||||||||||||||||||| |||||||| |||||| ||||| ||||||| ||| ||||||||||||| |
|
|
| T |
25361677 |
cctgtaccatctgatgtgagcctgtttgtcttcattttatttcaattcgtagttactcaataatagactttatgtaacatctctattggatattgtag |
25361580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University