View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13632_low_16 (Length: 260)
Name: NF13632_low_16
Description: NF13632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13632_low_16 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 44804511 - 44804252
Alignment:
| Q |
1 |
tgtgaagagcacaagcctgacactcggtgcaaaaaactatcgcctctggaaaacctacatcaccgcaagtgagacaaacagcttcctgcaatgaaaagta |
100 |
Q |
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| T |
44804511 |
tgtgaagagcacaagcctgacactcggtgcaaaaaactatcgcctctggaaaacctacatcaccgcaagtgagacaaacagcttcctgcgatgaaaagta |
44804412 |
T |
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| Q |
101 |
tacaaagtcttaccgaaatggttcaaaactctgtaaaatcaaaagtgattatgtgaagctccaaatatgtacaattgtatacaatactattctaaatgca |
200 |
Q |
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| T |
44804411 |
tacaaagtcttactgaaatggttcataactctgtaaaatcaaaagtgattaagtgaagctccaaatatgtacaattgtatacaatactattctaaatgca |
44804312 |
T |
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| Q |
201 |
tcattagtaggctcggctcttgactctggagtcatgtgtgttcgatgaaaaacataatca |
260 |
Q |
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| T |
44804311 |
tcattagtaggctcggctcttgactctggagtcatgtgtgttcgatgaaaaacacaatca |
44804252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 43055083 - 43055046
Alignment:
| Q |
43 |
cctctggaaaacctacatcaccgcaagtgagacaaaca |
80 |
Q |
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| T |
43055083 |
cctctggaaaacctatatcgccgcaagtgagacaaaca |
43055046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 43186021 - 43186082
Alignment:
| Q |
1 |
tgtgaagagcacaagcctgacactcggtgcaaaaaa-ctatcgcctctggaaaacctacatc |
61 |
Q |
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| T |
43186021 |
tgtgaagagcacaagcctggcacttgttgcaaaaaacctctaacctctggaaaacctacatc |
43186082 |
T |
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