View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13632_low_24 (Length: 231)
Name: NF13632_low_24
Description: NF13632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13632_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 41691493 - 41691278
Alignment:
| Q |
1 |
tattagtcaacataatcttcatcatggagagatgacagtaagagagactttggatttttcgggacgatgcttgggagttggaacaaggcatgacctactt |
100 |
Q |
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| T |
41691493 |
tattagtcaacataatcttcatcatggagagatgacagtaagagagactttggatttttcgggacgatgcttgggagttggaacaaggcatgacctactt |
41691394 |
T |
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| Q |
101 |
gtcgaaacgacaaggagagaaaagcaagcaggaatcaaacctgatccagatatagatgcattcatgaaagccactgcaatgagaggtcaagaaacaagtt |
200 |
Q |
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| T |
41691393 |
gtcgaaacaacaaggagagaaaagcaagcaggaatcaaacctgatccagatatagatgcattcatgaaagccacagcaatgagaggtcaagaaacaagtt |
41691294 |
T |
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| Q |
201 |
tgatcacagattatgt |
216 |
Q |
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| T |
41691293 |
tgatcacagattatgt |
41691278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 19538585 - 19538677
Alignment:
| Q |
1 |
tattagtcaacataatcttcatcatggagagatgacagtaagagagactttggatttttcgggacgatgcttgggagttggaacaaggcatga |
93 |
Q |
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| T |
19538585 |
tattagtcagcatgatcttcaccatggagaaacgacagtgagagagacgctggacttctccggacgctgcttgggagttggaacaaggtatga |
19538677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 199
Target Start/End: Original strand, 19538711 - 19538783
Alignment:
| Q |
127 |
agcaggaatcaaacctgatccagatatagatgcattcatgaaagccactgcaatgagaggtcaagaaacaagt |
199 |
Q |
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| T |
19538711 |
agcaggtatcaaaccagatcctgaaatagatgctttcatgaaagtaacatcaatggaaggtcaagaaacaagt |
19538783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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