View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13632_low_3 (Length: 675)
Name: NF13632_low_3
Description: NF13632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13632_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 545; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 55 - 660
Target Start/End: Original strand, 1836270 - 1836875
Alignment:
| Q |
55 |
tatcccctccttgctgatctaagatttccaaataaaaccttaattatatgagattccacgaatttgaattagtggtattctaaaatcccatgacacctaa |
154 |
Q |
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| T |
1836270 |
tatcccctccttgctgatcaaagatttccaaataaaaccttaattatatgagattccacgaatttggattagtggtattctaaaatcccatgacacctaa |
1836369 |
T |
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| Q |
155 |
gttctgaaaacgcgttatgaaacaggggactgaattgtgtcacttaatccaattctttattattgctccataaacattgcgccaatccattcccataatt |
254 |
Q |
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| T |
1836370 |
gttctgaaaacgcgttatgaaacaggggactgaattgtgtcacttaatccaattctttattattgctccataaacattgcgccaatccattcccataatt |
1836469 |
T |
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| Q |
255 |
tcaagttcaaaagtggtcacacacatgtcactctaacattaattaccatgctcttaatttcactttcagtcaacatttaatatacaatataaaaatctga |
354 |
Q |
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| T |
1836470 |
tcaagttcaaaagtggtcacacacatgtcactctaacattaattaccatgctcttaatttcactttcaatcaacatttaatatacaatataaaaatctca |
1836569 |
T |
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| Q |
355 |
tccgtgctaaattgcacataagcattttcacaattaaataaactaagtnnnnnnnnnnngtgtagcagcacatacaaacacaaattttgtgcacctacga |
454 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
1836570 |
tccgtgctaaattgcacataagcattttcacaattaaataaactaagtaaaaaaaaaaagtgtagcagcacatacaaacacaaattttgtgcacctacga |
1836669 |
T |
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| Q |
455 |
ggaaactcacttccaaagagtttcacctgaaagctaggtacgcacaatcacaatatctataaatacctttctatggcatagacaaaatttctcactagaa |
554 |
Q |
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| T |
1836670 |
ggaaactcacttccaaagagtttcacctgaaagctaggtacgcacaatcacaatatctataaatacctttctatggcatagacaaaatttctcactagaa |
1836769 |
T |
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| Q |
555 |
agtatcaatatcaagtaccaactaacatggacataattatatttcgataaaaactatacttaatttgcatgaacaatgtcttcaagtggtgctgctagtt |
654 |
Q |
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| T |
1836770 |
agtaacaatatcaagtaccaactaacattgacataaatatatttcgataaaaactatacttaatttgcatgaacaatgtcttcaagtggtgctgctagtt |
1836869 |
T |
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| Q |
655 |
ctgcat |
660 |
Q |
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|||||| |
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| T |
1836870 |
ctgcat |
1836875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 1836185 - 1836240
Alignment:
| Q |
1 |
gggtctcacaagacttatgaatcttacagtgtgtactgataaataaacataaagta |
56 |
Q |
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| T |
1836185 |
gggtctcacaagacttatgaatcttacagtgtgtactgataaataaacataaagta |
1836240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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