View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13632_low_4 (Length: 541)
Name: NF13632_low_4
Description: NF13632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13632_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 1 - 522
Target Start/End: Original strand, 29754344 - 29754845
Alignment:
| Q |
1 |
ggcaggcgatgtgtatggaggctgagagaagaatcacaagcgcgtgtgttgacaaaaattaattagcgtgccttttgaaagttggattaaa----atgga |
96 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
29754344 |
ggcaggcgatgtgtatggaggccaagagaagaatcacaagcgcgtgtgttgacaaaaattaattagcgtgccttttgaaagttggattaaattcaatgga |
29754443 |
T |
|
| Q |
97 |
tgttatttactcctctcatcatctctcataataattcaagtacttacttattgaagaacctcaagaagtaatcaaacatgtcaagaatattacatgtcaa |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
29754444 |
tgttatttactcctctcatcatctctcataataattcaagtacttacttattgaaggacctcaagaagtaatcaaacatgtcaa---------------- |
29754527 |
T |
|
| Q |
197 |
aaaacttgaatcattacattaaaatgttaaaaccattcaatatacaattgtttgttgagatgattgagtctactacatattgatagctaataggagtata |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
29754528 |
aaaacttgaatcattacattaaaatgttaaaaccattcaatatacaattgtttgttgagatgattgagtctactacatattgatagctaata------ta |
29754621 |
T |
|
| Q |
297 |
acattaaagggaactttgcagaagaaggacgaatgggcatatcattgccttgtcttgcatatatatgtgagtcgtatatgataagtcaaaggcatactat |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
29754622 |
acattaaagggaactttgcagaagaaggacgaatgggcatatcattgccttgtcttgcatat--atgtgagtcgtatatgataagtcaaaggcatactat |
29754719 |
T |
|
| Q |
397 |
cttatgtgcatggagctctaatcctcgagtattttcataactatgtcacgtgctcacaatattcattgctttaacagtcggagatttcttccatgcacaa |
496 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29754720 |
cttatgtgcatggagctctaatcctcgagtattttcataactatgtcacgtggtcacaatattcattgctttaacagtcggagatttcttccatgcacaa |
29754819 |
T |
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| Q |
497 |
ttcaacacgtgctcacctattgtacc |
522 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
29754820 |
ttcaacacgtgctcacctattgtacc |
29754845 |
T |
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