View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13632_low_5 (Length: 523)
Name: NF13632_low_5
Description: NF13632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13632_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 34016554 - 34016918
Alignment:
| Q |
1 |
tggtccccaaaagagcagtcgtagatttaatgaaccttcttaatattagacaggcatgtactatg-----------------ttaaataacaatttaaca |
83 |
Q |
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| T |
34016554 |
tggtccccaaaagattagtcgtagatttaatgaaccttcttaatattagacaggcatgtactatgctaaataacaatatacattaaataacaatttaaca |
34016653 |
T |
|
| Q |
84 |
caaaagataacaaatgaattgaaaacaacttctgatttacttttgaacacacacatacagagacgaatgattgattaaagcagtagatacatacgggact |
183 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
34016654 |
caaaagataacaaatgaattgaaaacaacttctgatttgcttttgaacacacacatactgagacgaatgattgattaaagcagtagatacatacgggact |
34016753 |
T |
|
| Q |
184 |
accgcagcatcagcaatttcaggattggtatgaagtatgtgctctaattcagctgggggaacctgnnnnnnngcaaggaaatgtaaatatagaaaatgat |
283 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
34016754 |
actgcagcatcagcaatttcaggattggtatgaagtatgtgctctaattcagctgggggaacctgaaaaaaagcaaggaaatgtaaatatagaaaatgat |
34016853 |
T |
|
| Q |
284 |
atcttcaaaaatatttgtcccttcacaatgcatcgcctgataagctttgtattagatcaattcct |
348 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34016854 |
atcttcaaaaatatttgtcccttcacaatgcatcgcctgataagctttgtattagatcaattcct |
34016918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 34024035 - 34023658
Alignment:
| Q |
1 |
tggtccccaaaagagcagtcgtagatttaatgaaccttcttaatattagacaggcatgtactatg-----------------ttaaataacaatttaaca |
83 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
34024035 |
tggtccccaaaagagtagtcgtagatttaatgaaccttcttaatattagacaggcatgtactatgctaaataacaatatacattaaataacaatttaaca |
34023936 |
T |
|
| Q |
84 |
caaaagataacaaa----------tgaattgaaaacaacttctgatttacttttgaacacacacatacagagacgaatgattgattaaagcagtagatac |
173 |
Q |
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|||||||||||||| ||||||||||| |||||||||||| |||| |||||||||| ||| |||||| ||||||||||||||||||||||| |
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| T |
34023935 |
caaaagataacaaaagcattgaaatgaattgaaaataacttctgatttgctttcgaacacacacgcacaaagacgattgattgattaaagcagtagatac |
34023836 |
T |
|
| Q |
174 |
atacgggactaccgcagcatcagcaatttcaggattggtatgaagtatgtgctctaattcagctgggggaacctgnnnnnnngcaaggaaatgtaa--at |
271 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
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| T |
34023835 |
atacgggactactgcagcatcagcaatttcaggattggtatgaagtatgtgctctaattcagctgggggaacctgaaaaaaagcaaggaaatgtaaatat |
34023736 |
T |
|
| Q |
272 |
atagaaaatgatatcttcaaaaatatttgtcc-cttcacaatgcatcgcctgataagctttgtattagatcaattcct |
348 |
Q |
| |
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|||| ||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
34023735 |
atagcaaatgatatcttcaaaaatatatgtccacttcacaatgcatcacctgataagctttgtatttgatcaattcct |
34023658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 346 - 514
Target Start/End: Original strand, 34018061 - 34018229
Alignment:
| Q |
346 |
cctaaactacccctcggcacagtcatctttgattctccttcttttctttccgtgctcaattccaccattcatactgataccgaacttcgcccggttgaaa |
445 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |
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| T |
34018061 |
cctaaactacccctcggcacagtcatctttgattctccttcttttctttccgtgctcaattccaccattgatactgataccgaacttcgccctgttgaaa |
34018160 |
T |
|
| Q |
446 |
caagtcaatcagacacagcagctatcctcttctcatccggaacaaccggacgagtcaaaggagtattat |
514 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34018161 |
caagtcaatcagacacagcagctatcctcttctcatccggaacaaccggacgagtcaaaggagtattat |
34018229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 95 - 348
Target Start/End: Complemental strand, 34031153 - 34030894
Alignment:
| Q |
95 |
aaatgaattgaaaacaacttctgatttacttttgaacacacacatacagagacgaatgattgattaaagcagtagatacatacgggactaccgcagcatc |
194 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
34031153 |
aaatgaattgaaaacaacttctgatttgcttttgaacacacacacacaga--cgaatgattgattaaagcagtagatacatacgggactactgcagcatc |
34031056 |
T |
|
| Q |
195 |
agcaatttcaggattggtatgaagtatgtgctctaattcagctgggggaacctgnnnnnnngcaaggaaatgtaaa-------tatagaaaatgatatct |
287 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||| ||||| |
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| T |
34031055 |
agcaatttcaggattggtatgaagtatgtgctctaattcagctgggggaacctgaaaaatagcaaggaaatgtaaagataggcgatagcaaatggtatct |
34030956 |
T |
|
| Q |
288 |
tcaaaaatatttgtcc-cttcacaatgcatcgcctgataagctttgtattagatcaattcct |
348 |
Q |
| |
|
|||||||||| ||||| |||||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
34030955 |
tcaaaaatatctgtccacttcacaatgcatcacctgataagctttgtatttgatcaattcct |
34030894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 346 - 514
Target Start/End: Original strand, 34027861 - 34028029
Alignment:
| Q |
346 |
cctaaactacccctcggcacagtcatctttgattctccttcttttctttccgtgctcaattccaccattcatactgataccgaacttcgcccggttgaaa |
445 |
Q |
| |
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|||||||||||||| ||||| ||||| ||||||||||||||||||||||||| |||||||||||| | ||||| |||| |||||||||||||||| || |
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| T |
34027861 |
cctaaactacccctaggcactgtcataactgattctccttcttttctttccgtgatcaattccaccactgatactcatactgaacttcgcccggttgtaa |
34027960 |
T |
|
| Q |
446 |
caagtcaatcagacacagcagctatcctcttctcatccggaacaaccggacgagtcaaaggagtattat |
514 |
Q |
| |
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||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
34027961 |
caagtcaatcagatacagcagcaatcctcttctcatccggaacaacgggacgagtcaaaggagtattat |
34028029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 97
Target Start/End: Complemental strand, 34031239 - 34031208
Alignment:
| Q |
66 |
ttaaataacaatttaacacaaaagataacaaa |
97 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
34031239 |
ttaaataacaatttaacacaaaagataacaaa |
34031208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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