View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13632_low_6 (Length: 512)
Name: NF13632_low_6
Description: NF13632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13632_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 13 - 497
Target Start/End: Complemental strand, 39584135 - 39583669
Alignment:
| Q |
13 |
tagggcaacgtacagttagtttaactttggcattacttatacaatgttttgattggaaaagaataaatgaggaagaaattgatatgactgaaggaaaagg |
112 |
Q |
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| T |
39584135 |
tagggcaacgtacagttagtttaactttggcattacttatccaatgttttgattggaaaagaataagtgaggaagaaattgatatgactgaaggaaaagg |
39584036 |
T |
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| Q |
113 |
agccactactccgaagttaattcccttggaggccatgtgtaaagctcgttcaaatgtcatcaacaaggtttatctaaaagttgatgaaaacatgtaagag |
212 |
Q |
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| T |
39584035 |
agccactactccgaagctaattcccttggaggccatgtgtaaagctcgttcaaatgtcatcaacaaggtttatctaaaagttgatgaaaacatgtaagag |
39583936 |
T |
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| Q |
213 |
aaagaaattctgttgccgatgagcttgctgagaatggtcatagtctccctcaactttactctcaacggtgggatttcac-nnnnnnnagttcctttgtta |
311 |
Q |
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| T |
39583935 |
aaggaaattctgttgccgatgagcttgctgagaatggtcatagtctccctcaactttactctcaatggtgggatttcacttttttttagttcctttgtta |
39583836 |
T |
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| Q |
312 |
gatacagatagcagtagcttaccttacttgagacgatcctttgtataatcttggttcatgtctctcctgcatttatttgatttgctttcattaaaaaatg |
411 |
Q |
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| T |
39583835 |
gatacagatagcagtagcttaccttacttgagacgatcctttgtataatcttggttcatgtctctcctgcatttatttgatttgctttcattcaaaaatg |
39583736 |
T |
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| Q |
412 |
tgaatgaaaatatatgtatgataaataaaatgttgtgtttttcttccacaccaaacacaatttgcatttgagtaaacatattaagt |
497 |
Q |
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| T |
39583735 |
tgaatga-------------------aaaatgttgtgtttttcttccacaccaaacacaatttgcatttgagtaaacatattaagt |
39583669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 57 - 206
Target Start/End: Complemental strand, 39572713 - 39572566
Alignment:
| Q |
57 |
tgttttgattggaaaagaataaatgaggaagaaattgatatgactgaaggaaaaggagccactactccgaagttaattcccttggaggccatgtgtaaag |
156 |
Q |
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| T |
39572713 |
tgtttcgattggaaaataataagtgagaaagaaattgat--gagttaaggaaaaggagtcactactccaaagccaattcccttagaggccatgtgtatag |
39572616 |
T |
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| Q |
157 |
ctcgttcaaatgtcatcaacaaggtttatctaaaagttgatgaaaacatg |
206 |
Q |
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| T |
39572615 |
ctcgctcaaatgtcatcaacaaggtttttctaaaagccggtgaaaacatg |
39572566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 432 - 482
Target Start/End: Complemental strand, 39572519 - 39572469
Alignment:
| Q |
432 |
ataaataaaatgttgtgtttttcttccacaccaaacacaatttgcatttga |
482 |
Q |
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| T |
39572519 |
ataaataaaatgcagtgtttttcatccacaccaaacacaatttgtatttga |
39572469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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