View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13632_low_7 (Length: 478)
Name: NF13632_low_7
Description: NF13632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13632_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 98; Significance: 4e-48; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 301 - 442
Target Start/End: Original strand, 21182181 - 21182322
Alignment:
| Q |
301 |
gagaagcttgctaaccacaaccacataatagataatgttgtttagtgaaactcttaacctttttagagacagatatggtcttcctatctatcattttcct |
400 |
Q |
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| T |
21182181 |
gagaagcttgctaaccacgaccacataatagataatgttgtttagtgaaactcttaacttttttagagacaaatatgatcttcctatttatcgctttcct |
21182280 |
T |
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| Q |
401 |
taggtctattttgatttgaggtgccaatctaattgggatctt |
442 |
Q |
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| T |
21182281 |
taggtatatttttatttgaggtgccaacctagttgggatctt |
21182322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 203 - 288
Target Start/End: Original strand, 21182014 - 21182099
Alignment:
| Q |
203 |
caaattagcaggtcagcctataaacacgatccaagggtgaacaaacaaatactcctgaagatcctttttggaatattagaggtatt |
288 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21182014 |
caaattagcaggtcagcctataaacccgatccaagggtgaacaaacaaatactcctgaagatcctttttggaatattagaggtatt |
21182099 |
T |
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