View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13633_high_1 (Length: 800)

Name: NF13633_high_1
Description: NF13633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13633_high_1
NF13633_high_1
[»] chr2 (2 HSPs)
chr2 (182-781)||(4194429-4195028)
chr2 (10-45)||(4194266-4194301)
[»] chr4 (1 HSPs)
chr4 (182-232)||(34924927-34924977)


Alignment Details
Target: chr2 (Bit Score: 580; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 182 - 781
Target Start/End: Original strand, 4194429 - 4195028
Alignment:
Q  182 aaccaagaaggtctctacctacaccaattcaaactctccttagacgatccatcctcttccttatccacatggaacaacaacaacccaacaccttgtacct 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4194429 aaccaagaaggtctctacctacaccaattcaaactctccttagacgatccatcctcttccttatccacatggaacaacaacaacccaacaccttgtacct 4194528  T
Q  282 ggtcaggcataacctgcgacccaacaaacacaactgtaacaaaaatcaacctctccaacttcaacctagctggtccattacaaacctcaaccctctgtcg 381  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  4194529 ggtcaggcataacctgcgacccaacaaacacaactgtaacaaaaatcaacctctcaaacttcaacctagctggtccattacaaacctcaactctctgtcg 4194628  T
Q  382 tctcacaaacttaaccacccttatcctaacaaacaacttaataaaccaaacacttcctttagatatttctacttgcacctcccttactcacttagacctc 481  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4194629 tctcacaaacttaaccacccttatcctaacaaacaacttaataaaccaaacacttcctttagatatttctacttgcacctcccttactcacttagacctc 4194728  T
Q  482 tctaacaatctcctcattggtacactcccacatacactaacacacctccctaacctccgttatcttgatttaacagcaaacaacttctcaggctcaatcc 581  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4194729 tctaacaatctcctcattggcacactcccacatacactaacacacctccctaacctccgttatcttgatttaacagcaaacaacttctcaggctcaatcc 4194828  T
Q  582 caacctcattcggaacatttcccaaactagaagtgctttcactcgtttacaatcttctagaatcttctattccaccttccctcgcaaacattacctcttt 681  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4194829 caacctcattcggaacatttcccaaactagaagtgctttcactcgtttacaatcttctagaatcttctattccaccttccctcgcaaacattacctcttt 4194928  T
Q  682 gaaaacactcaatctgtcatttaacccctttctaccttctccgatcccgccggagatcggaaacctaactaacctcgaagttctatggcttagttcatgt 781  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  4194929 gaaaacactcaatctgtcatttaacccctttctaccttctccgatccccccggagttcggaaacctaactaacctcgaagttctatggcttagttcatgt 4195028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 45
Target Start/End: Original strand, 4194266 - 4194301
Alignment:
Q  10 catcatcaatcactaccaataccattgtttactatg 45  Q
    ||||| ||||||||||||||||||||||||||||||    
T  4194266 catcaacaatcactaccaataccattgtttactatg 4194301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 182 - 232
Target Start/End: Complemental strand, 34924977 - 34924927
Alignment:
Q  182 aaccaagaaggtctctacctacaccaattcaaactctccttagacgatcca 232  Q
    |||||||||||| | |||||  |||||||||||||| ||||||||||||||    
T  34924977 aaccaagaaggtttatacctctaccaattcaaactcaccttagacgatcca 34924927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University