View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13633_high_12 (Length: 228)
Name: NF13633_high_12
Description: NF13633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13633_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 1025652 - 1025731
Alignment:
| Q |
7 |
tgagtatctagcta--gctttactataaagaaaaagataccatgttttcactaaagttttcgatggtcacactttcaaat |
84 |
Q |
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| T |
1025652 |
tgagtatctagctatagctttactataaagaaaaagataccatgttttcactaaagttttcgatagtcacactttcaaat |
1025731 |
T |
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Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 177 - 228
Target Start/End: Original strand, 1025834 - 1025885
Alignment:
| Q |
177 |
tctatgtatatgtatccaaatatatttttatttgaaagtcttattcactttt |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1025834 |
tctatgtatatgtatccaaatatatttttatttgaaagtcttattcactttt |
1025885 |
T |
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