View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13633_high_2 (Length: 567)
Name: NF13633_high_2
Description: NF13633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13633_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 534; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 18 - 559
Target Start/End: Original strand, 2569896 - 2570437
Alignment:
| Q |
18 |
tgttttatatggaatagagacgtgttctgtatcactgcttgatgcaattctgctaacattaacttttagtcacgttgagcttccaatttttcaagtgtag |
117 |
Q |
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| T |
2569896 |
tgttttatatggaatagagacgtgttctgtatcactgcttgatgcaattctgctaacataaacttttagtcacgttgagcttccaatttttcaagtgtag |
2569995 |
T |
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| Q |
118 |
gaaccgggcaaagaggctgttgattgctctgtctgtggatcatctggacacgcaatttctggtgacttgaatttgttagataaattgattctaaatgcag |
217 |
Q |
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| T |
2569996 |
gaaccgggcaaagaggctgttgattgctctgtctgtggatcatctggacacgcaatttctggtgacttgaatttgttagataaattgattctaaatgcag |
2570095 |
T |
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| Q |
218 |
atgcacgttacattataattgtggaaaaggtgagtttgtttgaagtgatatttcagtggccaattacatcatgctaatttgaaatgttccacattttgcc |
317 |
Q |
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| T |
2570096 |
atgcacgttacattataattgtggaaaaggtgagtttgtttgaagtgatatttcagtggccaattacatcatgctaatttgaaatgttccacattttgcc |
2570195 |
T |
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| Q |
318 |
taacaaagaaagatatgttttgatacaataacccttgcttatgtttagcatgcaatatttcaacggtttgctgaagataggttttttaatcaaattccaa |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2570196 |
taacaaagaaagatatgttttgatacaataacccttgcttatgtttagcatgcaatatttcaacggcttgctgaagataggttttttaatcaaattccaa |
2570295 |
T |
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| Q |
418 |
gcattcttatcacagctaaaggttacccagatattgccacaaggtactctgcacactactagtctgcagtatacagaattaaataacataaaagttctga |
517 |
Q |
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| T |
2570296 |
gcattcttatcacagctaaaggttacccagatattgccacaaggtactctgcacactactagtctgcagtatacagaattaaataacataaaagttctga |
2570395 |
T |
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| Q |
518 |
tgtgaagcttttagaagttctgctctcatcacatttgatgat |
559 |
Q |
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| T |
2570396 |
tgtgaagcttttagaagttctgctctcatcacatttgatgat |
2570437 |
T |
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