View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13633_high_3 (Length: 466)

Name: NF13633_high_3
Description: NF13633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13633_high_3
NF13633_high_3
[»] chr4 (4 HSPs)
chr4 (48-323)||(1990834-1991109)
chr4 (53-326)||(26439643-26439914)
chr4 (126-323)||(20357027-20357224)
chr4 (228-303)||(16878981-16879057)
[»] chr3 (3 HSPs)
chr3 (93-325)||(11004043-11004275)
chr3 (116-323)||(3297147-3297354)
chr3 (143-323)||(43772916-43773095)
[»] chr1 (1 HSPs)
chr1 (126-325)||(9022189-9022388)
[»] scaffold0014 (1 HSPs)
scaffold0014 (119-295)||(11193-11369)
[»] chr8 (3 HSPs)
chr8 (119-323)||(44609066-44609269)
chr8 (113-314)||(13145131-13145330)
chr8 (188-319)||(26378278-26378411)
[»] chr2 (3 HSPs)
chr2 (322-452)||(6668454-6668584)
chr2 (119-322)||(1499600-1499803)
chr2 (119-303)||(1500653-1500837)
[»] chr7 (1 HSPs)
chr7 (210-321)||(8482532-8482644)


Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 48 - 323
Target Start/End: Complemental strand, 1991109 - 1990834
Alignment:
Q  48 gcacagtgaaggtgagcttcgcagagaaaagtgtgaaacgcgggagagaaaagtgagaaacgccggatatgaaatgacagagaattgtgaaatttttgta 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1991109 gcacagtgaaggtgagcttcgcagagaaaagtgtgaaacgcgggagagaaaagtgagaaacgccggatatgaaatgacagagaattgtgaaatttttgta 1991010  T
Q  148 ttttaggtgttattttaaatcctttaaattttgcaaaagagaaattcttatcaaaatgctttgaattttaaaaatgacttaaatattttcccaaacaatg 247  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  1991009 ttttaggtgttattttaaatcctttaaattttggaaaagagaaattcttatcaaaatgctttgaattttaaaaatgacttaaatattttcccaaacaata 1990910  T
Q  248 gaatttgggtcaagtcaatttaaattctccaaaaaattacattccctcgttaaaatactttatccaaacacactct 323  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  1990909 gaatttgggtcaagtcaatttaaattctccaaaaaattacattccctcattaaaatactttatccaaacacactct 1990834  T

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Target: chr4; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 53 - 326
Target Start/End: Original strand, 26439643 - 26439914
Alignment:
Q  53 gtgaaggtgagcttcgcagagaaaagtgtgaaacgcgggagagaaaagtgagaaacgccggatatgaaatgacagagaattgtgaaatttttgtatttta 152  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |||  ||||||||||||||||||||||||||||| |||||    
T  26439643 gtgaaggtgagcttcacagagaaaagtgtgaaacgcgggagagaaaagtgagaaacgcgtgat--gaaatgacagagaattgtgaaatttttgtgtttta 26439740  T
Q  153 ggtgttattttaaatcctttaaattttgcaaaagagaaattcttatcaaaatgctttgaattttaaaaatgacttaaatattttcccaaacaatggaatt 252  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||| |||||    
T  26439741 ggtgttattttaaatccttcaaattttgcaaaagaaaaattcttatctaaatgccttgaattttaaaaatgacttaaatatttttccaaacaatagaatt 26439840  T
Q  253 tgggtcaagtcaatttaaattctccaaaaaattacattccctcgttaaaatactttatccaaacacactcttaa 326  Q
    |||||||||||||||||||||||| ||||||||||||| |||| |||||||||| ||| |||||||||||||||    
T  26439841 tgggtcaagtcaatttaaattctctaaaaaattacatttcctcattaaaatactctattcaaacacactcttaa 26439914  T

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Target: chr4; HSP #3
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 126 - 323
Target Start/End: Complemental strand, 20357224 - 20357027
Alignment:
Q  126 agagaattgtgaaatttttgtattttaggtgttattttaaatcctttaaattttgcaaaagagaaattcttatcaaaatgctttgaattttaaaaatgac 225  Q
    |||||||| ||||||||| ||||||||||||||||||||||||| | ||||||||||||||| ||||||||||| |||||| |||||||||||||||||     
T  20357224 agagaattctgaaattttggtattttaggtgttattttaaatccatcaaattttgcaaaagaaaaattcttatctaaatgccttgaattttaaaaatgag 20357125  T
Q  226 ttaaatattttcccaaacaatggaatttgggtcaagtcaatttaaattctccaaaaaattacattccctcgttaaaatactttatccaaacacactct 323  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||| ||||||| ||||||| || ||||||||||||||||    
T  20357124 ttaaatattttcccaaacaatggaatttgggtcaagtcaatttaaatatttcaaaaaattactttccctcattaaaatgctctatccaaacacactct 20357027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 303
Target Start/End: Complemental strand, 16879057 - 16878981
Alignment:
Q  228 aaatattttcccaaacaatggaatttgggtcaagtcaatttaaattctccaaaaa-attacattccctcgttaaaat 303  Q
    ||||||||||||||| | | ||||||||  |||||||||| |||| ||||||||| ||| |||| |||| |||||||    
T  16879057 aaatattttcccaaagagtagaatttggtccaagtcaattcaaatactccaaaaagattgcattacctcattaaaat 16878981  T

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Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 93 - 325
Target Start/End: Original strand, 11004043 - 11004275
Alignment:
Q  93 gagaaaagtgagaaacgccggatatgaaatgacagagaattgtgaaatttttgtattttaggtgttattttaaatcctttaaattttgcaaaagagaaat 192  Q
    |||||||||| |||||||  |  ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  11004043 gagaaaagtgtgaaacgcgtgtgatgaaatgacagagaattgtgaaatgtttgtattttaggtgttattttaaatccttcaaattttgcaaaagagaaat 11004142  T
Q  193 tcttatcaaaatgctttgaattttaaaaatgacttaaatattttcccaaacaatggaatttgggtcaagtcaatttaaattctccaaaaaattacattcc 292  Q
    ||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11004143 tcttatctaaatgccttgaatttaaaaaatgacttaaatattttcccaaacaatggaatttgggtcaagtcaatttaaattctccaaaaaattacattcc 11004242  T
Q  293 ctcgttaaaatactttatccaaacacactctta 325  Q
    ||| |||||||||| ||||||||||||||||||    
T  11004243 ctcattaaaatactctatccaaacacactctta 11004275  T

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Target: chr3; HSP #2
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 116 - 323
Target Start/End: Complemental strand, 3297354 - 3297147
Alignment:
Q  116 atgaaatgacagagaattgtgaaatttttgtattttaggtgttattttaaatcctttaaattttgcaaaagagaaattcttatcaaaatgctttgaattt 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||| ||||||||    
T  3297354 atgaaatgacagagaattgtgaaatttttgtattttaggtgttattataaatccttcaaattttgcaaaagagaaattcttatctaaatgccttgaattt 3297255  T
Q  216 taaaaatgacttaaatattttcccaaacaatggaatttgggtcaagtcaatttaaattctccaaaaaattacattccctcgttaaaatactttatccaaa 315  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  3297254 taaaaatgacttaaatattctcccaaacaatggaatttgggtcaagtcaatttaaattctccaaaaaattacattccctcattaaaatactctatccaaa 3297155  T
Q  316 cacactct 323  Q
    ||||||||    
T  3297154 cacactct 3297147  T

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Target: chr3; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 143 - 323
Target Start/End: Complemental strand, 43773095 - 43772916
Alignment:
Q  143 ttgtattttaggtgttattttaaatcctttaaattttgcaaaagagaaattcttatcaaaatgctttgaattttaaaaatgacttaaatattttcccaaa 242  Q
    ||||| ||||||||||||||||||| |||||||||||| |||||| ||||||||||| ||||   |||||||| |||||||| |||||||||||||||||    
T  43773095 ttgtaatttaggtgttattttaaatgctttaaattttggaaaagaaaaattcttatctaaatatcttgaatttcaaaaatgaattaaatattttcccaaa 43772996  T
Q  243 caatggaatttgggtcaagtcaatttaaattctccaaaaaattacattccctcgttaaaatactttatccaaacacactct 323  Q
    || | |||||| |  ||| |||||| |||| |||||||| |||||||||||| |||||| | |  ||||||||||||||||    
T  43772995 cagt-gaatttagtccaaatcaattcaaatactccaaaagattacattccctagttaaagttccctatccaaacacactct 43772916  T

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Target: chr1 (Bit Score: 160; Significance: 4e-85; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 126 - 325
Target Start/End: Original strand, 9022189 - 9022388
Alignment:
Q  126 agagaattgtgaaatttttgtattttaggtgttattttaaatcctttaaattttgcaaaagagaaattcttatcaaaatgctttgaattttaaaaatgac 225  Q
    |||||||| ||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  9022189 agagaattctgaaattttggtattttaggtgttattttaaatccatcaaattttgcaaaagagaaattcttatctaaatgccttgaattttaaaaatgac 9022288  T
Q  226 ttaaatattttcccaaacaatggaatttgggtcaagtcaatttaaattctccaaaaaattacattccctcgttaaaatactttatccaaacacactctta 325  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||| |||||||||||||||||||||    
T  9022289 ttaaatattttcccaaacaatggaatttgggtcaagtcaatttaaatactccaaaaaattactttccctcattaaaatgctttatccaaacacactctta 9022388  T

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Target: scaffold0014 (Bit Score: 145; Significance: 4e-76; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 119 - 295
Target Start/End: Original strand, 11193 - 11369
Alignment:
Q  119 aaatgacagagaattgtgaaatttttgtattttaggtgttattttaaatcctttaaattttgcaaaagagaaattcttatcaaaatgctttgaattttaa 218  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||| |||||| |||||||||||    
T  11193 aaatgacaaagaattgtgaaatttttgtattttaggtgttattttaaatccatcaaattttgcaaaagaaaaattcttatctaaatgccttgaattttaa 11292  T
Q  219 aaatgacttaaatattttcccaaacaatggaatttgggtcaagtcaatttaaattctccaaaaaattacattccctc 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  11293 aaatgacttaaatattttcccaaacaatggaatttgggtcaagtcaatttaaatactccaaaaaattactttccctc 11369  T

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Target: chr8 (Bit Score: 137; Significance: 2e-71; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 119 - 323
Target Start/End: Complemental strand, 44609269 - 44609066
Alignment:
Q  119 aaatgacagagaattgtgaaatttttgtattttaggtgttattttaaatcctttaaattttgcaaaagagaaattcttatcaaaatgctttgaattttaa 218  Q
    ||||||||||||||| |  |||||| ||| ||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||| |||||||||||    
T  44609269 aaatgacagagaattttacaattttagtaatttaggtgttattttaaatccctcaaattttgcaaaagagaaattcttatctaaatgccttgaattttaa 44609170  T
Q  219 aaatgacttaaatattttcccaaacaatggaatttgggtcaagtcaatttaaattctccaaaaaattacattccctcgttaaaatactttatccaaacac 318  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||| |||||||  |||||| ||||||||||||||    
T  44609169 aaatgacttaaatattttcccaaacaatagaatttgggtcaagtcaatttaaatactcc-aaaaattactttccctcactaaaatgctttatccaaacac 44609071  T
Q  319 actct 323  Q
    |||||    
T  44609070 actct 44609066  T

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Target: chr8; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 113 - 314
Target Start/End: Complemental strand, 13145330 - 13145131
Alignment:
Q  113 gatatgaaatgacagagaattgtgaaatttttgtattttaggtgttattttaaatcctttaaattttgcaaaagagaaattcttatcaaaatgctttgaa 212  Q
    |||||||||||| |||||||| |  || |||| ||  |||||||||||||||||  ||| ||||||||||| |||||  |||||||| ||||   |||||    
T  13145330 gatatgaaatgagagagaattttacaaattttataacttaggtgttattttaaactcttcaaattttgcaagagaga--ttcttatctaaatctgttgaa 13145233  T
Q  213 ttttaaaaatgacttaaatattttcccaaacaatggaatttgggtcaagtcaatttaaattctccaaaaaattacattccctcgttaaaatactttatcc 312  Q
    |||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||| ||||||| || |||||    
T  13145232 ttttaaaaatgacttaaatatttttccaaacaatggaatatgggccaagtcaatttaaatactccaaaaaattacattccctcattaaaattctctatcc 13145133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 188 - 319
Target Start/End: Complemental strand, 26378411 - 26378278
Alignment:
Q  188 gaaattcttatcaaaatgctttgaattttaaaaa-tgacttaaatattttcccaaacaatggaatttgggtcaagtcaatttaaattctccaaaaa-att 285  Q
    |||||||||||| |||||| ||||| |||||||| |||||||||||| |||||||||| ||||||||||| ||| ||||||||||| || |||||| |||    
T  26378411 gaaattcttatctaaatgccttgaagtttaaaaaatgacttaaatatattcccaaacagtggaatttgggccaaatcaatttaaatacttcaaaaatatt 26378312  T
Q  286 acattccctcgttaaaatactttatccaaacaca 319  Q
    ||||| |||| ||||||| || ||||||||||||    
T  26378311 acatttcctcattaaaattctctatccaaacaca 26378278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 115; Significance: 3e-58; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 322 - 452
Target Start/End: Original strand, 6668454 - 6668584
Alignment:
Q  322 cttaattttaatttcaacttttaggctattaatcaatgaagaacaagcttgaatgttctgaaggtggtgtcatgcgataactaacaggtgtagataatgt 421  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  6668454 cttaattttaatttcaacttttaggctattaaataatgaagaacaagcttgaatgctctgaaggtggtgtcatgcgataactaacaggtgtagataatgt 6668553  T
Q  422 atgtatctctctgcatcagtttgttgttatt 452  Q
    || ||||||||||||||||||||||||||||    
T  6668554 atatatctctctgcatcagtttgttgttatt 6668584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 119 - 322
Target Start/End: Complemental strand, 1499803 - 1499600
Alignment:
Q  119 aaatgacagagaattgtgaaatttttgtattttaggtgttattttaaatcctttaaattttgcaaaagagaaattcttatcaaaatgctttgaattttaa 218  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||| ||||| ||||||||||||||| |||||| ||||||||||     
T  1499803 aaatgacagagaattttgaaatttttgtaatttaggtgttattttaaatccttcaaattatgcaagagagaaattcttatctaaatgccttgaattttag 1499704  T
Q  219 aaatgacttaaatattttcccaaacaatggaatttgggtcaagtcaatttaaattctccaaaaaattacattccctcgttaaaatactttatccaaacac 318  Q
     |||||||||||||||||| |||||| || |||||||  |||||||||||||||  ||||||||| | |||||||| ||| || | || |||||||||||    
T  1499703 gaatgacttaaatattttctcaaacagtgaaatttggtccaagtcaatttaaatagtccaaaaaaatgcattccctagttcaatttctctatccaaacac 1499604  T
Q  319 actc 322  Q
    ||||    
T  1499603 actc 1499600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 119 - 303
Target Start/End: Original strand, 1500653 - 1500837
Alignment:
Q  119 aaatgacagagaattgtgaaatttttgtattttaggtgttattttaaatcctttaaattttgcaaaagagaaattcttatcaaaatgctttgaattttaa 218  Q
    |||||||| |||||| |||| |||||||| ||||||| ||||||||||||| |  |||||||||| ||| ||||||||||| |||||| || ||||||||    
T  1500653 aaatgacaaagaattttgaactttttgtaatttaggtattattttaaatccctctaattttgcaagagaaaaattcttatctaaatgccttaaattttaa 1500752  T
Q  219 aaatgacttaaatattttcccaaacaatggaatttgggtcaagtcaatttaaattctccaaaaaattacattccctcgttaaaat 303  Q
    |||||||||||||| |||| |||||| || ||||||| |||||||||||||||| || | ||||||||||||| ||| |||||||    
T  1500753 aaatgacttaaatactttctcaaacagtgaaatttggttcaagtcaatttaaatacttcgaaaaattacattctctcattaaaat 1500837  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 210 - 321
Target Start/End: Original strand, 8482532 - 8482644
Alignment:
Q  210 gaattttaaaaatgacttaaatattttcc-caaacaatggaatttgggtcaagtcaatttaaattctccaaaaaattacattccctcgttaaaatacttt 308  Q
    |||||||||||||||||||||||||||   ||||   |||||||||| |||  ||||||||||| || |||||||||||||||| |   |||||| || |    
T  8482532 gaattttaaaaatgacttaaatatttttttcaaaacgtggaatttggttcagatcaatttaaatacttcaaaaaattacattccttaaataaaattctct 8482631  T
Q  309 atccaaacacact 321  Q
    |||||||||||||    
T  8482632 atccaaacacact 8482644  T

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