View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13633_high_5 (Length: 360)
Name: NF13633_high_5
Description: NF13633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13633_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 4 - 343
Target Start/End: Original strand, 45700427 - 45700766
Alignment:
| Q |
4 |
atgtcgaagaaaataattttgagtcaatcttttggcatagatcaaactaatgacttgagaatctatctaggagttcctttcctccatcaaaggatcacaa |
103 |
Q |
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| T |
45700427 |
atgtcgaagcatataattttgagtcaatcttttggcatagatcaaactaatgacttgagaatctatctaggagttcctttcctccatcaaaggatcacaa |
45700526 |
T |
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| Q |
104 |
agaatgaaagaatactaactccaacatgcttaataaaatgaggaagaatctttcatcatgaaaagcaagtactatgttgatcgctgagaattactttgac |
203 |
Q |
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| T |
45700527 |
agaatgaaagaatactaactctaacatgcttaataaaatgaggaagaatctttcatcatgaaaagcaagtactatgttgatcgctgagaattactttgac |
45700626 |
T |
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| Q |
204 |
ctaatcctcacttgttagtattccactatatattatgaaaaatggttcatctgccagtattagtgtgtgaagaggctgaaggaatttgtagaaacttcat |
303 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
45700627 |
ctaatcctcacttggtagtattccactatatattatgaaaaatggttcatctgccagtgttagtgtgtgaagaggctgaaggaatttgtagaaacttcat |
45700726 |
T |
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| Q |
304 |
atggggcaacactagtaaacatataaaatgtcacacaatt |
343 |
Q |
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| T |
45700727 |
atggggcaacactagtaaacatataaaatgtcacacaatt |
45700766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 256 - 326
Target Start/End: Complemental strand, 42503290 - 42503220
Alignment:
| Q |
256 |
gccagtattagtgtgtgaagaggctgaaggaatttgtagaaacttcatatggggcaacactagtaaacata |
326 |
Q |
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|||||| |||||||||||||| |||| | |||||||||||||||||||||||| |||||||||||| |||| |
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| T |
42503290 |
gccagtgttagtgtgtgaagatgctggaagaatttgtagaaacttcatatgggacaacactagtaagcata |
42503220 |
T |
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