View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13633_high_9 (Length: 239)
Name: NF13633_high_9
Description: NF13633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13633_high_9 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 24 - 239
Target Start/End: Original strand, 1881948 - 1882163
Alignment:
| Q |
24 |
tacgtacgtaatcctccaatcattcatgtgtaattcttcaaatagtataaaagaacatttatttatttattaccacatttgtggagattggtataaccaa |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1881948 |
tacgtacgtaatcctccaatcattcatgtgtaattcttcaaatagtataaaagaacatttatttatttattaccacatttgtggagattggtataaccaa |
1882047 |
T |
|
| Q |
124 |
ttaatataaggttgtaaaaacgcaaattgtcgattttggtgtacaagtaggacgaaacatataaccacacaagtcacattcactttgcttcccatcccat |
223 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1882048 |
ttaatataaggttgtaaaaactcaaattgtcgattttggtgtacaagtaggacgaaacatctaaccacacaagtcacattcactttgcttcccatcccat |
1882147 |
T |
|
| Q |
224 |
catccaccgcctcttt |
239 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
1882148 |
catccaccgcctcttt |
1882163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University