View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13633_low_4 (Length: 377)

Name: NF13633_low_4
Description: NF13633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13633_low_4
NF13633_low_4
[»] chr3 (15 HSPs)
chr3 (3-363)||(22366464-22366824)
chr3 (3-363)||(22441279-22441645)
chr3 (3-363)||(22435171-22435531)
chr3 (3-363)||(22628983-22629343)
chr3 (46-363)||(22634041-22634358)
chr3 (51-326)||(22466545-22466811)
chr3 (195-363)||(22352542-22352710)
chr3 (44-158)||(22352418-22352532)
chr3 (45-362)||(22356557-22356889)
chr3 (225-363)||(22429975-22430113)
chr3 (259-363)||(22457306-22457410)
chr3 (259-363)||(22480287-22480391)
chr3 (307-363)||(37929600-37929656)
chr3 (45-84)||(22457092-22457131)
chr3 (45-84)||(22480073-22480112)


Alignment Details
Target: chr3 (Bit Score: 180; Significance: 4e-97; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 3 - 363
Target Start/End: Original strand, 22366464 - 22366824
Alignment:
Q  3 cctttcgaatttgtcttcataatcataaacaccagagatattgagggacaacaagtttggcatactttggagtaatttcattgcatcattctgttgct-- 100  Q
    |||||| |||||||||||||||| |    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||  || ||      
T  22366464 cctttccaatttgtcttcataattac---caccagagatatggagggacaacaagtttggcatactttggagtaatttcattgcatcgttcccttcctcc 22366560  T
Q  101 -tcataagtttcacctccagcttaacaaggtttgtgagttttgaaatccactcaggcaatttctctaaatttccgaagagtataaaatgttgaatcttag 199  Q
     || ||||| |||||| ||  | |||||||||||||||||||| |||||||||||| || |||| |||||| ||| |||||  || |||||||| | |||    
T  22366561 ttcgtaagtctcaccttcatgtcaacaaggtttgtgagttttggaatccactcaggaaacttctttaaattcccgtagagtccaatatgttgaagcatag 22366660  T
Q  200 gtgggggtgaattcaaatccagatcaatgaatgtgttcaatgcgattcctctaatatgcagtttctctagttgttgcatttgattgattgagaaagatat 299  Q
    |||||||||||||||||||||||||||||||||| |   || ||| ||| |||||||  |||||||| ||||||||||| | |||||||||  |||||||    
T  22366661 gtgggggtgaattcaaatccagatcaatgaatgtctcatattcgactccactaatatttagtttctccagttgttgcatcttattgattgaagaagatat 22366760  T
Q  300 agcactcatatatttactcctaacaccggccaagcccaattcccttagctgctttagttttcct 363  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22366761 agcactcatatatttactcctaacaccggccaagcccaattcccttagctgctttagttttcct 22366824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 3 - 363
Target Start/End: Original strand, 22441279 - 22441645
Alignment:
Q  3 cctttcgaatttgtcttcataatcataaacacca---gagatattgagggacaacaagtttggcatactttggagtaatttcattgcatcattctgttgc 99  Q
    ||||||||||||||||||||||| || |  ||||   ||||||| |||||||||||||||||||||||||  ||||||||||||||||||||| ||||||    
T  22441279 cctttcgaatttgtcttcataataatcagaaccatccgagatatggagggacaacaagtttggcatacttatgagtaatttcattgcatcattttgttgc 22441378  T
Q  100 ttcataagtttcacctccagcttaacaaggtttgtgagttttgaaatccactcaggcaatttctctaaatttccgaagagtataaaatgttgaatcttag 199  Q
    ||| ||||| ||||    ||||||||||||||| ||||||||  |||||||||||| || || | |||||| |||  || | ||| |||||||| |||||    
T  22441379 ttcgtaagtgtcactctaagcttaacaaggtttctgagtttttgaatccactcaggaaacttatataaattcccgtcgaatttaacatgttgaagcttag 22441478  T
Q  200 gtgggggtgaattcaaatccagatcaatgaatgtgt---tcaatgcgattcctctaatatgcagtttctctagttgttgcatttgattgattgagaaaga 296  Q
    ||||||||||||||||||||||||||||||||||||   |  ||  || ||| ||||||   |||||||| | ||||||||| |  ||||||||||||||    
T  22441479 gtgggggtgaattcaaatccagatcaatgaatgtgttagtagattggactccactaataattagtttctccaattgttgcatctcgttgattgagaaaga 22441578  T
Q  297 tatagcactcatatatttactcctaacaccggccaagcccaattcccttagctgctttagttttcct 363  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||| ||||||    
T  22441579 tatagcactcatatatttactcctaacaccggtcaagcccaatttccttagctgttttagctttcct 22441645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 3 - 363
Target Start/End: Original strand, 22435171 - 22435531
Alignment:
Q  3 cctttcgaatttgtcttcataatcataaacaccagagatattgagggacaacaagtttggcatactttggagtaatttcattgcatcattctgttgcttc 102  Q
    |||||| ||||||||||||||||||  |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||  || ||||    
T  22435171 cctttccaatttgtcttcataatcaggaacaccagagatatggagggacaacaagtttggcatactttgaagtaatttcattgcatcattcacttccttc 22435270  T
Q  103 ataagtttcacctccagcttaacaaggtttgtgagttttgaaatccactcaggcaatttctctaaatttccgaagagtataaaatgttgaatcttaggtg 202  Q
    | | ||  ||  |||||||||||||| |||  ||||||||||||||||||||| || || | | ||| ||| |||||| ||| | ||| || | ||||||    
T  22435271 aaacgtggcaaatccagcttaacaagattttggagttttgaaatccactcaggaaacttatttgaatatccaaagagtttaacacgttcaagcctaggtg 22435370  T
Q  203 ggggtgaattcaaatccagatcaatgaatgtgttcaatgcgattcctctaatatgcagtttctctagttgttgcatttgattgattgagaaagatatagc 302  Q
    ||||||||||||||||||||||||||||  |||  |||  ||||||   |||||||||| |||||||||  ||||| | |||||||||| ||||||||||    
T  22435371 ggggtgaattcaaatccagatcaatgaaaatgtctaatttgattccaaaaatatgcagtctctctagttcatgcatcttattgattgaggaagatatagc 22435470  T
Q  303 actcatatatttactcctaacaccggccaagcccaattcccttagctgctttagttttcct 363  Q
    ||||||||||||||  |||||| |  |||||||||||||||| |||||  |||| ||||||    
T  22435471 actcatatatttaccactaacaacaaccaagcccaattccctaagctgtgttagctttcct 22435531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 3 - 363
Target Start/End: Original strand, 22628983 - 22629343
Alignment:
Q  3 cctttcgaatttgtcttcataatcataaacaccagagatattgagggacaacaagtttggcatactttggagtaatttcattgcatcattctgttgcttc 102  Q
    |||||| ||||||||||||||||||| |  ||||  || || |||||||| ||| ||| ||||||||||||||||||||||||||||||||  |||||||    
T  22628983 cctttccaatttgtcttcataatcatcactaccactgacatagagggacagcaattttcgcatactttggagtaatttcattgcatcattcccttgcttc 22629082  T
Q  103 ataagtttcacctccagcttaacaaggtttgtgagttttgaaatccactcaggcaatttctctaaatttccgaagagtataaaatgttgaatcttaggtg 202  Q
     ||||  ||||   |||||||||||| ||   ||||||||||||||||||||| |||||||  |||| |||  ||||| ||| | |||||| | ||||||    
T  22629083 gtaagcatcactctcagcttaacaagattctggagttttgaaatccactcaggtaatttcttaaaatatccatagagtttaacacgttgaagcctaggtg 22629182  T
Q  203 ggggtgaattcaaatccagatcaatgaatgtgttcaatgcgattcctctaatatgcagtttctctagttgttgcatttgattgattgagaaagatatagc 302  Q
    ||||||| ||| |||||||||||||||||||||   ||  || ||| ||||| || |||||||| | ||||||||| | |||||||||| ||||||||||    
T  22629183 ggggtgacttctaatccagatcaatgaatgtgtcatattggactccactaatttgtagtttctccaattgttgcatcttattgattgaggaagatatagc 22629282  T
Q  303 actcatatatttactcctaacaccggccaagcccaattcccttagctgctttagttttcct 363  Q
    |||||||||||||||||||||||||  |||| |||||||||||||||| ||||| ||||||    
T  22629283 actcatatatttactcctaacaccgagcaagaccaattcccttagctgatttagctttcct 22629343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 46 - 363
Target Start/End: Original strand, 22634041 - 22634358
Alignment:
Q  46 agggacaacaagtttggcatactttggagtaatttcattgcatcattctgttgcttcataagtttcacctccagcttaacaaggtttgtgagttttgaaa 145  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||  || |||| |||   |||||| || |||||| || | |  |||||||||||    
T  22634041 agggacaacaagtttggcatacttttgagtaatttcattgcatcattcccttccttcgtaatcgtcaccttcaacttaacgagatattggagttttgaaa 22634140  T
Q  146 tccactcaggcaatttctctaaatttccgaagagtataaaatgttgaatcttaggtgggggtgaattcaaatccagatcaatgaatgtgttcaatgcgat 245  Q
    |||||||||||||||||  |||||  || |  ||| ||| | |||||| ||| |||||||||||||||||||||| |||||||||||||||  ||  |||    
T  22634141 tccactcaggcaatttcaataaataccctataagtttaacacgttgaagctttggtgggggtgaattcaaatccatatcaatgaatgtgttatatctgat 22634240  T
Q  246 tcctctaatatgcagtttctctagttgttgcatttgattgattgagaaagatatagcactcatatatttactcctaacaccggccaagcccaattccctt 345  Q
    |||||||||||  |||||||| | ||||||||| |  ||||||||| ||||||||||||||||||||||||||||||||||| ||||||  ||||||||     
T  22634241 tcctctaatatttagtttctccaattgttgcatcttgttgattgaggaagatatagcactcatatatttactcctaacaccgaccaagcttaattcccta 22634340  T
Q  346 agctgctttagttttcct 363  Q
    ||||||||||| ||||||    
T  22634341 agctgctttagctttcct 22634358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 51 - 326
Target Start/End: Original strand, 22466545 - 22466811
Alignment:
Q  51 caacaagtttggcatactttggagtaatttcattgcatcattctgttgcttcataagtttcacctccagcttaacaaggtttgtgagttttgaaatccac 150  Q
    |||||||||||||||||||||||||||||||||||||||||||  || |||| ||| | ||||||  |||| |||||| ||| |||||||||||||||||    
T  22466545 caacaagtttggcatactttggagtaatttcattgcatcattcccttccttcctaactgtcaccttgagctcaacaagatttttgagttttgaaatccac 22466644  T
Q  151 tcaggcaa-tttctctaaatttccgaagagtataaaatgttgaatcttaggtgggggtgaattcaaatccagatcaatgaatgtgttcaatgcgattcct 249  Q
    ||||| || ||||| |||||  | |   ||| ||| | |||||| | |||||||||||||||||||||||||| |||||         |||| |||||||    
T  22466645 tcaggtaactttct-taaatgccagtcaagtttaacacgttgaagcctaggtgggggtgaattcaaatccagaccaatg---------aatgagattcct 22466734  T
Q  250 ctaatatgcagtttctctagttgttgcatttgattgattgagaaagatatagcactcatatatttactcctaacacc 326  Q
    |  ||| | |||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  22466735 ccgataagtagtttctccatttgttgcatttgattgattgaggaagatatagcactcatatatttactcctaacacc 22466811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 195 - 363
Target Start/End: Original strand, 22352542 - 22352710
Alignment:
Q  195 cttaggtgggggtgaattcaaatccagatcaatgaatgtgttcaatgcgattcctctaatatgcagtttctctagttgttgcatttgattgattgagaaa 294  Q
    |||||||||||||||||||||||||||||||||||||||||      ||| |||  ||||||  |||||||| | || |||||| |||||||||||| ||    
T  22352542 cttaggtgggggtgaattcaaatccagatcaatgaatgtgtaaggcacgactccaataatatatagtttctccaatttttgcatctgattgattgaggaa 22352641  T
Q  295 gatatagcactcatatatttactcctaacaccggccaagcccaattcccttagctgctttagttttcct 363  Q
    |||| ||||||||||||||||||||||||||||  |||| |||| ||||||||||| ||||| ||||||    
T  22352642 gatagagcactcatatatttactcctaacaccgtacaagaccaactcccttagctgatttagctttcct 22352710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 44 - 158
Target Start/End: Original strand, 22352418 - 22352532
Alignment:
Q  44 tgagggacaacaagtttggcatactttggagtaatttcattgcatcattctgttgcttcataagtttcacctccagcttaacaaggtttgtgagttttga 143  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||  ||| ||||| | |||||||||||| ||   |||||||||    
T  22352418 tgagggacaacaaatttggcatactttggagtaatttcattgcatcattctctggcttcggaagattcactttcagcttaacaagattctggagttttga 22352517  T
Q  144 aatccactcaggcaa 158  Q
    |||||||||||||||    
T  22352518 aatccactcaggcaa 22352532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 45 - 362
Target Start/End: Original strand, 22356557 - 22356889
Alignment:
Q  45 gagggacaacaagtttggcatactttggagtaatttcattgcatcattctgttgcttcataagtttcacctccagcttaacaaggtttgtgagttttgaa 144  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||  || | || ||||  | || | |||||| ||||| |||  ||||||||||    
T  22356557 gagggacaacaaatttggcatactttggagtaatttcattgcatcattcacttccctcgtaaggcttacattcagcttgacaagattttggagttttgaa 22356656  T
Q  145 atccactcaggcaatttctctaaatt----tccgaagagtataaaatgttgaatcttaggtgggggtgaattcaaatccagatcaatgaatgtg------ 234  Q
    |||||||||||||| || | ||| ||    ||   | ||| ||| | |||||| | |||||||||||||||||||||| ||||||||||||| |          
T  22356657 atccactcaggcaacttatttaatttaaggtcttga-agtttaacacgttgaagcataggtgggggtgaattcaaatcaagatcaatgaatgcgccatat 22356755  T
Q  235 ----ttc--aatgcgattcctctaatatgcagtttctctagttgttgcatttgattgattgagaaagatatagcactcatatatttactcctaacaccgg 328  Q
        |||  | | ||| |||| |||||   |||||||| | || |||||| | |||||||||| |||||||| ||||||||||||||||| ||| ||||     
T  22356756 cccattccgattccgactcctttaatacttagtttctccaatttttgcatctcattgattgaggaagatataccactcatatatttactcttaagaccgc 22356855  T
Q  329 ccaagcccaattcccttagctgctttagttttcc 362  Q
     ||||| ||||||||| |||||||||||||||||    
T  22356856 tcaagctcaattccctaagctgctttagttttcc 22356889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 225 - 363
Target Start/End: Original strand, 22429975 - 22430113
Alignment:
Q  225 aatgaatgtgttcaatgcgattcctctaatatgcagtttctctagttgttgcatttgattgattgagaaagatatagcactcatatatttactcctaaca 324  Q
    |||||||||||   || ||| ||| |||||||  |||||||| | ||  ||||| |||||||||||| || ||| |||||||||||||||||||| ||||    
T  22429975 aatgaatgtgtcagattcgactccactaatatttagtttctccaattcgtgcatctgattgattgaggaacataaagcactcatatatttactccaaaca 22430074  T
Q  325 ccggccaagcccaattcccttagctgctttagttttcct 363  Q
    |||||||||||||||||||||||||| ||||| ||||||    
T  22430075 ccggccaagcccaattcccttagctgatttagctttcct 22430113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 259 - 363
Target Start/End: Original strand, 22457306 - 22457410
Alignment:
Q  259 agtttctctagttgttgcatttgattgattgagaaagatatagcactcatatatttactcctaacaccggccaagcccaattcccttagctgctttagtt 358  Q
    |||||||| | || |||||| | |||||||||| |||||||||||||||| |||   ||||||||||||  |||| ||||||||||||| ||||||||||    
T  22457306 agtttctccactttttgcatctcattgattgaggaagatatagcactcatgtatccgctcctaacaccgatcaagaccaattcccttaggtgctttagtt 22457405  T
Q  359 ttcct 363  Q
    |||||    
T  22457406 ttcct 22457410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 259 - 363
Target Start/End: Original strand, 22480287 - 22480391
Alignment:
Q  259 agtttctctagttgttgcatttgattgattgagaaagatatagcactcatatatttactcctaacaccggccaagcccaattcccttagctgctttagtt 358  Q
    |||||||| | || |||||| | |||||||||| |||||||||||||||| |||   ||||||||||||  |||| ||||||||||||| ||||||||||    
T  22480287 agtttctccactttttgcatctcattgattgaggaagatatagcactcatgtatccgctcctaacaccgatcaagaccaattcccttaggtgctttagtt 22480386  T
Q  359 ttcct 363  Q
    |||||    
T  22480387 ttcct 22480391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 307 - 363
Target Start/End: Original strand, 37929600 - 37929656
Alignment:
Q  307 atatatttactcctaacaccggccaagcccaattcccttagctgctttagttttcct 363  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  37929600 atatatttactcctaacaccggccaagcccaattcccttagctgttttagctttcct 37929656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 45 - 84
Target Start/End: Original strand, 22457092 - 22457131
Alignment:
Q  45 gagggacaacaagtttggcatactttggagtaatttcatt 84  Q
    ||||| |||||||||||||||||||| |||||||||||||    
T  22457092 gagggtcaacaagtttggcatacttttgagtaatttcatt 22457131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 45 - 84
Target Start/End: Original strand, 22480073 - 22480112
Alignment:
Q  45 gagggacaacaagtttggcatactttggagtaatttcatt 84  Q
    ||||| |||||||||||||||||||| |||||||||||||    
T  22480073 gagggtcaacaagtttggcatacttttgagtaatttcatt 22480112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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