View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13633_low_6 (Length: 340)
Name: NF13633_low_6
Description: NF13633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13633_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 18 - 327
Target Start/End: Original strand, 13990136 - 13990446
Alignment:
| Q |
18 |
atcacttgttcactagggctgaccttggtggattcactttgacagaaaagtgtttgattttactaatttgtttggccaaatttattcgtgcacannnnnn |
117 |
Q |
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| T |
13990136 |
atcacttgttcactagggctgaccttggtggattcactttgacagaaaagtgtttgattttactaatttgtttggccaaatttattcgtgcacatttttt |
13990235 |
T |
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| Q |
118 |
nnaacctttgactaaagtcctgtattgactaatgtacaacaagaataaggtgaggatggatatgttcaattattatgtgtagtaaattttcagaaatgtt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13990236 |
ttaacctttgactaaagtcctgtattgactaatgtacaacaagaataaggtgaggatggatatgttcaattattatgtgtagtaaattttcagaaatgtt |
13990335 |
T |
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| Q |
218 |
gttccaaataaggctgcaaaagctttatcttaccattaccaatcaagtcttaatactatcacaccag-agggtacgtttttaggtaagtctttattgact |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
13990336 |
gttccaaataaggctgcaaaagctttatcttaccattaccaatcaagtcttaatactatcacaccagaagggtacgtttttaggtaagtctttattgact |
13990435 |
T |
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| Q |
317 |
tcattacggga |
327 |
Q |
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||||||||||| |
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| T |
13990436 |
tcattacggga |
13990446 |
T |
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