View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13633_low_7 (Length: 338)
Name: NF13633_low_7
Description: NF13633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13633_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 15 - 319
Target Start/End: Complemental strand, 10121708 - 10121404
Alignment:
| Q |
15 |
catcatcaaaggcagctaacaagtccacatcatagcaacctgaatcccaacaagttttgtaaacagaaatcctagccattggtgcacctcccctagcatt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10121708 |
catcatcaaaggcagctaacaagtccacatcatagcaacctgaatcccaacaagttttgtaaacagaaatcctagccattggtgcacctcccctagcatt |
10121609 |
T |
|
| Q |
115 |
tcctgctgctaacccattataattcatgtttgagacgtatcgtcctgctgctgtggaagctgtatggctcccatgaccagagctgtctcttgcagatctg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10121608 |
tcctgctgctaacccattataattcatgtttgagacgtatcgtcctgctgctgtggaagctgtatggctcccatgaccagagctgtctcttgcagatctg |
10121509 |
T |
|
| Q |
215 |
aaagagacttttttgtctgacccttcttctgcttcatatccactcatatagtatcttgctcctatcactttcctataatatactatcaatgattaaccaa |
314 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10121508 |
aaagagacttttttgtctgacccttcttctgtttcatatccactcatatagtatcttgctcctatcactttcctataatatactatcaatgattaaccaa |
10121409 |
T |
|
| Q |
315 |
tgaag |
319 |
Q |
| |
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||||| |
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| T |
10121408 |
tgaag |
10121404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 116; Significance: 6e-59; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 15 - 290
Target Start/End: Original strand, 30628369 - 30628644
Alignment:
| Q |
15 |
catcatcaaaggcagctaacaagtccacatcatagcaacctgaatcccaacaagttttgtaaacagaaatcctagccattggtgcacctcccctagcatt |
114 |
Q |
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|||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||| |||| ||| |||||||| |||||||||||||| ||| |
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| T |
30628369 |
catcatcaaatgcagctagcaagtccacatcatagcaacctgaatcccaacatgttttgtacacagcaattctagccataggtgcacctccccttgcacc |
30628468 |
T |
|
| Q |
115 |
tcctgctgctaacccattataattcatgtttgagacgtatcgtcctgctgctgtggaagctgtatggctcccatgaccagagctgtctcttgcagatctg |
214 |
Q |
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||| ||||| || ||||||||||||||| || |||| ||||| ||| | |||||||||||||| |||||||| | |||||| || || |||||| |
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| T |
30628469 |
tccacttgctagtcctttataattcatgttttgtacatatctccctgcagctattgaagctgtatggctaccatgacctgtgctgtccctagctgatctg |
30628568 |
T |
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| Q |
215 |
aaagagacttttttgtctgacccttcttctgcttcatatccactcatatagtatcttgctcctatcactttcctat |
290 |
Q |
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|| |||| |||| | |||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
30628569 |
aatgagatttttgcatttgactcttcctctgcttcatatccactcttatagtatcttgctcctatcactttcctat |
30628644 |
T |
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