View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13633_low_8 (Length: 293)
Name: NF13633_low_8
Description: NF13633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13633_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 9 - 270
Target Start/End: Complemental strand, 49105593 - 49105332
Alignment:
| Q |
9 |
gacatcatcaaattaagctataataaataatagtgttagctagttgtaaataaatagcgttttattgttgttaatcacatcatctaaatgtcaaattaag |
108 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49105593 |
gacagcatcaaattaagctataataaataatagtgttagctagttgtaaataaatagcgttttattgttgttaatcacatcatctaaatgtcaaattaag |
49105494 |
T |
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| Q |
109 |
tacactggttcaagacagtaatagaacaaccgtgcttgttttagtttctttctgagcggagatcgaataatgctgccgaggtctgcagctgtagtaatag |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49105493 |
tacactggttcaagacagtaatagaacaaccgtgcttgttttagtttctttctgagcggagatcgaataatgctgccgaggtctgcagctgtagtaatag |
49105394 |
T |
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| Q |
209 |
tgttgttgattataggaagtgtgataggagtagcagctgtagtggactgcaagcctcatcgg |
270 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
49105393 |
tgttgttgattataggaagtgtgataggagtagcagctgtagtcgactgcaagcctcatcgg |
49105332 |
T |
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