View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13634_high_2 (Length: 675)

Name: NF13634_high_2
Description: NF13634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13634_high_2
NF13634_high_2
[»] chr3 (16 HSPs)
chr3 (14-660)||(35213836-35214470)
chr3 (520-660)||(19890719-19890859)
chr3 (531-660)||(29523715-29523844)
chr3 (531-660)||(11203860-11203989)
chr3 (531-660)||(12342196-12342324)
chr3 (531-660)||(33496588-33496717)
chr3 (534-660)||(48570012-48570138)
chr3 (543-652)||(40930510-40930619)
chr3 (599-660)||(7031055-7031116)
chr3 (541-652)||(2755891-2756002)
chr3 (551-651)||(34332805-34332905)
chr3 (13-153)||(41304281-41304419)
chr3 (541-660)||(26770969-26771088)
chr3 (592-651)||(36801106-36801165)
chr3 (595-652)||(19920263-19920320)
chr3 (541-652)||(963143-963254)
[»] chr6 (14 HSPs)
chr6 (520-660)||(20882992-20883132)
chr6 (531-660)||(17606304-17606433)
chr6 (531-652)||(21630077-21630198)
chr6 (531-660)||(10577219-10577348)
chr6 (531-660)||(17573625-17573754)
chr6 (520-660)||(11462453-11462588)
chr6 (589-660)||(17579109-17579180)
chr6 (541-660)||(15958793-15958912)
chr6 (589-652)||(18651262-18651325)
chr6 (65-127)||(2516303-2516365)
chr6 (594-652)||(2553686-2553744)
chr6 (543-649)||(24767406-24767512)
chr6 (588-652)||(12734174-12734238)
chr6 (545-652)||(13937749-13937856)
[»] chr5 (18 HSPs)
chr5 (527-660)||(18359058-18359191)
chr5 (531-660)||(27767083-27767212)
chr5 (531-660)||(8300152-8300281)
chr5 (531-660)||(25857394-25857523)
chr5 (531-660)||(33385344-33385473)
chr5 (531-652)||(10776813-10776935)
chr5 (551-652)||(28535665-28535766)
chr5 (594-650)||(8228077-8228133)
chr5 (593-653)||(19255154-19255214)
chr5 (543-655)||(42928177-42928289)
chr5 (551-652)||(35983781-35983882)
chr5 (594-650)||(23238435-23238491)
chr5 (541-641)||(27165932-27166032)
chr5 (520-634)||(24407995-24408109)
chr5 (594-652)||(27117194-27117252)
chr5 (552-646)||(31641567-31641660)
chr5 (544-649)||(18089744-18089849)
chr5 (541-652)||(33169707-33169818)
[»] chr2 (8 HSPs)
chr2 (525-658)||(10999915-11000048)
chr2 (520-660)||(14439793-14439933)
chr2 (520-660)||(12645577-12645717)
chr2 (531-658)||(38604344-38604471)
chr2 (552-660)||(40176709-40176817)
chr2 (552-655)||(41207062-41207165)
chr2 (593-660)||(17764994-17765061)
chr2 (596-660)||(28252761-28252825)
[»] chr8 (13 HSPs)
chr8 (520-652)||(2170391-2170523)
chr8 (531-660)||(20824337-20824466)
chr8 (531-660)||(37434173-37434302)
chr8 (520-660)||(43270491-43270634)
chr8 (527-660)||(13200164-13200297)
chr8 (531-652)||(17699531-17699652)
chr8 (520-642)||(42177548-42177670)
chr8 (24-102)||(43396583-43396663)
chr8 (541-660)||(25090428-25090547)
chr8 (544-652)||(41665352-41665460)
chr8 (541-646)||(9922656-9922761)
chr8 (543-652)||(13396437-13396546)
chr8 (598-650)||(32266615-32266667)
[»] chr7 (9 HSPs)
chr7 (520-660)||(37254799-37254939)
chr7 (531-660)||(18532669-18532798)
chr7 (520-660)||(25619500-25619646)
chr7 (543-652)||(235419-235528)
chr7 (543-652)||(11277234-11277343)
chr7 (543-652)||(47877032-47877141)
chr7 (541-652)||(17720684-17720795)
chr7 (64-150)||(31023543-31023629)
chr7 (596-649)||(29968027-29968080)
[»] chr4 (16 HSPs)
chr4 (520-660)||(20002766-20002906)
chr4 (531-660)||(12697854-12697983)
chr4 (531-660)||(45472679-45472808)
chr4 (520-660)||(55725645-55725785)
chr4 (531-652)||(8361149-8361270)
chr4 (534-652)||(2822010-2822128)
chr4 (543-650)||(15740272-15740379)
chr4 (543-652)||(7403962-7404071)
chr4 (543-652)||(19755316-19755425)
chr4 (543-652)||(19784381-19784490)
chr4 (551-650)||(1828530-1828629)
chr4 (544-655)||(11587181-11587292)
chr4 (66-114)||(21402206-21402254)
chr4 (573-660)||(54483171-54483258)
chr4 (598-652)||(47685932-47685986)
chr4 (541-652)||(46145724-46145835)
[»] chr1 (6 HSPs)
chr1 (520-660)||(37191169-37191309)
chr1 (531-660)||(16917779-16917908)
chr1 (531-652)||(43388416-43388537)
chr1 (51-147)||(48046184-48046280)
chr1 (543-652)||(51052529-51052638)
chr1 (552-660)||(47623068-47623176)
[»] scaffold0472 (1 HSPs)
scaffold0472 (594-650)||(3303-3359)


Alignment Details
Target: chr3 (Bit Score: 513; Significance: 0; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 14 - 660
Target Start/End: Original strand, 35213836 - 35214470
Alignment:
Q  14 aaatttcaaaagtaaaataatcgtgaagatatagaaggaaaaaacataaggtaaatgcaagtaaatttataaatattgatgacgtcattttagataaaga 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  35213836 aaatttcaaaagtaaaataatcgtgaagatatagaaggaaaaaacataaggtaaatgcaaggaaatttataaatattgatgaggtcattttagataaaga 35213935  T
Q  114 tcctagtagtggtgtttcaaatgttgcataaaaaatttcatcacgtgaggggcttacatcaaagattggtgctcaaagggaatgataatttacaaacctt 213  Q
    | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35213936 ttctaggagtggtgtttcaaatgttgcataaaaaatttcatcacgtgaggggcttacatcaaagattggtgctcaaagggaatgataatttacaaacctt 35214035  T
Q  214 tgaaatgaatcttaagttttaaactaggatctacaataaattagga---agaaatcctcagttttggtctgatttaaaatatgtaaaaaatatgtcaagt 310  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||           |||||    
T  35214036 tgaaacgaatcttaagttttaaactaggatctacaataaattaggaggtagaaatcctcagttttggtctgatttaaaatatgt-----------caagt 35214124  T
Q  311 gtggaggatagagtgatttctcatcgacatgttaaaattttgtcgcagccaaagcctttatcagatatcactacagaaccaatcccatgctatagattta 410  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  35214125 gtggaggatagagtgatctctcatcgacatgttaatattttgtcgcagccaaagcctttatcagatatcactaccgaaccaatcccatgctatagattta 35214224  T
Q  411 ataaagaatcgaataaaaaacaaattgaggatcaaaatactaatgcatttcatgatatgcatatggttagttcttagagtgatataatgaccaaaaagaa 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35214225 ataaagaatcgaataaaaaacaaattgaggatcaaaatactaatgcatttcatgatatgcatatggttagttcttagagtgatataatgaccaaaaagaa 35214324  T
Q  511 ctatataatatcagattagaggttatactcttcgtggtgtctatgacatgttgacatcatgggaacaacctcatgttcatcaaaatatggagttaatctg 610  Q
    ||||||||||||| ||||||||||||||| ||||||||||     ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  35214325 ctatataatatcatattagaggttatactgttcgtggtgta----acatgttaacatcacgggaacaacctcatgttcatcaaaatatggagttaatctg 35214420  T
Q  611 acataaacagattcctttaaaagtttctatccttgcttggcggctgttga 660  Q
     ||||||||| |||||||||||||||||||||||| ||||||| ||||||    
T  35214421 gcataaacaggttcctttaaaagtttctatccttgtttggcggatgttga 35214470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 520 - 660
Target Start/End: Complemental strand, 19890859 - 19890719
Alignment:
Q  520 atcagattagaggttatactcttcgtggtgtctatgacatgttgacatcatgggaacaacctcatgttcatcaaaatatggagttaatctgacataaaca 619  Q
    |||||||||||||||||||| |||||||||| ||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||| ||||||||    
T  19890859 atcagattagaggttatactgttcgtggtgtatatgacatgttgacatcacaggaataacctcatgttcatcaaaatatggagttaatctggcataaaca 19890760  T
Q  620 gattcctttaaaagtttctatccttgcttggcggctgttga 660  Q
    | |||||||||||||||| |||||||| | |||| ||||||    
T  19890759 ggttcctttaaaagtttccatccttgcattgcggttgttga 19890719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 531 - 660
Target Start/End: Original strand, 29523715 - 29523844
Alignment:
Q  531 ggttatactcttcgtggtgtctatgacatgttgacatcatgggaacaacctcatgttcatcaaaatatggagttaatctgacataaacagattcctttaa 630  Q
    ||||||||| |||||||||| |||||| |||||||||||  |||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||    
T  29523715 ggttatactgttcgtggtgtatatgacttgttgacatcacaggaacaacctcatgttcatcaaaatatggagttaatttggcataaacaggttcctttaa 29523814  T
Q  631 aagtttctatccttgcttggcggctgttga 660  Q
    |||||||||||||||||||||| |||||||    
T  29523815 aagtttctatccttgcttggcgactgttga 29523844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 531 - 660
Target Start/End: Complemental strand, 11203989 - 11203860
Alignment:
Q  531 ggttatactcttcgtggtgtctatgacatgttgacatcatgggaacaacctcatgttcatcaaaatatggagttaatctgacataaacagattcctttaa 630  Q
    ||||||||| |||||||||| |||||  |||||||||||  |||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||    
T  11203989 ggttatactgttcgtggtgtatatgatttgttgacatcacaggaacaacctcatgttcatcaaaatatggagttaatttggcataaacaggttcctttaa 11203890  T
Q  631 aagtttctatccttgcttggcggctgttga 660  Q
    |||||||||| ||||||||||| |||||||    
T  11203889 aagtttctatacttgcttggcgactgttga 11203860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 531 - 660
Target Start/End: Original strand, 12342196 - 12342324
Alignment:
Q  531 ggttatactcttcgtggtgtctatgacatgttgacatcatgggaacaacctcatgttcatcaaaatatggagttaatctgacataaacagattcctttaa 630  Q
    ||||||||| ||| |||||| |||||| |||||||||||  |||||||||||||||||||||||||||||||||||| || ||||||||| || ||||||    
T  12342196 ggttatactgttcatggtgtatatgacttgttgacatcacaggaacaacctcatgttcatcaaaatatggagttaatttggcataaacaggtt-ctttaa 12342294  T
Q  631 aagtttctatccttgcttggcggctgttga 660  Q
    |||||||||||||||||||||| |||||||    
T  12342295 aagtttctatccttgcttggcgactgttga 12342324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 531 - 660
Target Start/End: Complemental strand, 33496717 - 33496588
Alignment:
Q  531 ggttatactcttcgtggtgtctatgacatgttgacatcatgggaacaacctcatgttcatcaaaatatggagttaatctgacataaacagattcctttaa 630  Q
    ||||||||| ||| |||||| |||||| |||||||||||  |||||||||||||||||||||| ||||||||||||| || ||||||||| |||||||||    
T  33496717 ggttatactgttcatggtgtatatgacttgttgacatcacaggaacaacctcatgttcatcaatatatggagttaatttggcataaacaggttcctttaa 33496618  T
Q  631 aagtttctatccttgcttggcggctgttga 660  Q
    ||||||||||| |||||||||| |||||||    
T  33496617 aagtttctatcattgcttggcgactgttga 33496588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 534 - 660
Target Start/End: Original strand, 48570012 - 48570138
Alignment:
Q  534 tatactcttcgtggtgtctatgacatgttgacatcatgggaacaacctcatgttcatcaaaatatggagttaatctgacataaacagattcctttaaaag 633  Q
    |||||| ||||||| || |||||| |||||||||||   |||||||||||| ||||||||||||||||||||||||  || |||||||| ||| ||||||    
T  48570012 tatactgttcgtggggtatatgacttgttgacatcacatgaacaacctcatattcatcaaaatatggagttaatctagcacaaacagatacctctaaaag 48570111  T
Q  634 tttctatccttgcttggcggctgttga 660  Q
    ||||  ||||||||| |||| ||||||    
T  48570112 tttcagtccttgcttagcggttgttga 48570138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 543 - 652
Target Start/End: Original strand, 40930510 - 40930619
Alignment:
Q  543 cgtggtgtctatgacatgttgacatcatgggaacaacctcatgttcatcaaaatatggagttaatctgacataaacagattcctttaaaagtttctatcc 642  Q
    ||||| |||||||||||| ||||||||  ||| ||||||||  | |||||||| ||||||||| | |||||||||||| ||||| | ||||| |||||||    
T  40930510 cgtggagtctatgacatgctgacatcacaggagcaacctcagttgcatcaaaacatggagttagtttgacataaacaggttcctctcaaagtatctatcc 40930609  T
Q  643 ttgcttggcg 652  Q
    ||||||||||    
T  40930610 ttgcttggcg 40930619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 599 - 660
Target Start/End: Original strand, 7031055 - 7031116
Alignment:
Q  599 ggagttaatctgacataaacagattcctttaaaagtttctatccttgcttggcggctgttga 660  Q
    ||||||||| || ||||||||| ||||||||||| ||||||||||||||||||| |||||||    
T  7031055 ggagttaatttggcataaacaggttcctttaaaactttctatccttgcttggcgtctgttga 7031116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 541 - 652
Target Start/End: Complemental strand, 2756002 - 2755891
Alignment:
Q  541 ttcgtggtgtctatgacatgttgacatcatgggaacaacctcatgtt-catcaaaatatggagttaatctgacataaacagattcctttaaaagtttcta 639  Q
    |||||||||| ||||| |||||||||||   ||||||||| |||||| ||||||||||||||||| || || || |||||| | ||||| ||||| ||||    
T  2756002 ttcgtggtgtgtatgatatgttgacatcgcaggaacaacc-catgttacatcaaaatatggagttgatttggcacaaacaggtacctttgaaagtgtcta 2755904  T
Q  640 tccttgcttggcg 652  Q
    |  ||||||||||    
T  2755903 tatttgcttggcg 2755891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 551 - 651
Target Start/End: Original strand, 34332805 - 34332905
Alignment:
Q  551 ctatgacatgttgacatcatgggaacaacctcatgttcatcaaaatatggagttaatctgacataaacagattcctttaaaagtttctatccttgcttgg 650  Q
    |||||||||| ||||||||  ||| || || ||  | ||||| |||||||||||||| || ||||||||| ||||| | ||||| |||||||||||||||    
T  34332805 ctatgacatgctgacatcacaggagcagccccagttacatcataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttgg 34332904  T
Q  651 c 651  Q
    |    
T  34332905 c 34332905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 13 - 153
Target Start/End: Complemental strand, 41304419 - 41304281
Alignment:
Q  13 aaaatttcaaaagtaaaataatcgtgaagatatagaaggaaaaaacataaggtaaatgcaagtaaatttataaatattgatgacgtcattttagataaag 112  Q
    ||||||||| ||| |||| ||| ||||| ||||  |||||||||||||| | ||||||||| ||| ||| | ||| ||||||| || ||| |||||| |     
T  41304419 aaaatttcataagcaaaa-aattgtgaaaatatgaaaggaaaaaacata-gataaatgcaattaatttttttaatgttgatgaggtaattatagatagaa 41304322  T
Q  113 atcctagtagtggtgtttcaaatgttgcataaaaaatttca 153  Q
    ||  ||| ||||||| |||| ||||| ||||||||||||||    
T  41304321 attttaggagtggtggttcacatgttacataaaaaatttca 41304281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 541 - 660
Target Start/End: Original strand, 26770969 - 26771088
Alignment:
Q  541 ttcgtggtgtctatgacatgttgacatcatgggaacaacctcatgttcatcaaaatatggagttaatctgacataaacagattcctttaaaagtttctat 640  Q
    |||||||||| ||||||||| | |||| |  |||||| ||| |  | |||| ||||||||||||||| || |||||||||  |||| | ||||| |||||    
T  26770969 ttcgtggtgtgtatgacatgctaacattacaggaacatccttagttacatccaaatatggagttaatgtggcataaacaggctcctcttaaagtctctat 26771068  T
Q  641 ccttgcttggcggctgttga 660  Q
     ||| |||||||||| ||||    
T  26771069 tcttacttggcggcttttga 26771088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 592 - 651
Target Start/End: Original strand, 36801106 - 36801165
Alignment:
Q  592 aaaatatggagttaatctgacataaacagattcctttaaaagtttctatccttgcttggc 651  Q
    |||||||||||||||| |  |||||| || |||| |||||||||| ||||||||||||||    
T  36801106 aaaatatggagttaatttagcataaataggttcccttaaaagtttatatccttgcttggc 36801165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 595 - 652
Target Start/End: Original strand, 19920263 - 19920320
Alignment:
Q  595 atatggagttaatctgacataaacagattcctttaaaagtttctatccttgcttggcg 652  Q
    ||||||| ||||| || ||||||||| ||||| | ||||| |||||||||||||||||    
T  19920263 atatggacttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcg 19920320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 541 - 652
Target Start/End: Original strand, 963143 - 963254
Alignment:
Q  541 ttcgtggtgtctatgacatgttgacatcatgggaacaacctcatgtt-catcaaaatatggagttaatctgacataaacagattcctttaaaagtttcta 639  Q
    |||||||||| ||||| ||| |||| ||   ||||||||| |||||| ||||||||||||||||| || || || |||||| | ||||| ||||| ||||    
T  963143 ttcgtggtgtgtatgatatgctgacttcgcaggaacaacc-catgttacatcaaaatatggagttgatttggcacaaacaggtgcctttgaaagtgtcta 963241  T
Q  640 tccttgcttggcg 652  Q
    |  ||||||||||    
T  963242 tttttgcttggcg 963254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 101; Significance: 1e-49; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 520 - 660
Target Start/End: Original strand, 20882992 - 20883132
Alignment:
Q  520 atcagattagaggttatactcttcgtggtgtctatgacatgttgacatcatgggaacaacctcatgttcatcaaaatatggagttaatctgacataaaca 619  Q
    ||||||||||||| |||| | |||||||||| ||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||| |||||| |    
T  20882992 atcagattagaggctatattgttcgtggtgtatatgacatgttgacatcacaggaacaaccacatgttcatcaaaatatggagttaatctggcataaata 20883091  T
Q  620 gattcctttaaaagtttctatccttgcttggcggctgttga 660  Q
    | |||||||||||||||||||||||||||||||||||||||    
T  20883092 ggttcctttaaaagtttctatccttgcttggcggctgttga 20883132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 531 - 660
Target Start/End: Original strand, 17606304 - 17606433
Alignment:
Q  531 ggttatactcttcgtggtgtctatgacatgttgacatcatgggaacaacctcatgttcatcaaaatatggagttaatctgacataaacagattcctttaa 630  Q
    ||||||||| |||||||||| |||||| |||||||||||  ||||||| |||||||||||||||||||||||||||| || ||||||||| |||||||||    
T  17606304 ggttatactgttcgtggtgtatatgacttgttgacatcacaggaacaatctcatgttcatcaaaatatggagttaatttggcataaacaggttcctttaa 17606403  T
Q  631 aagtttctatccttgcttggcggctgttga 660  Q
    |||||||||||||||||||||| |||||||    
T  17606404 aagtttctatccttgcttggcgactgttga 17606433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 531 - 652
Target Start/End: Original strand, 21630077 - 21630198
Alignment:
Q  531 ggttatactcttcgtggtgtctatgacatgttgacatcatgggaacaacctcatgttcatcaaaatatggagttaatctgacataaacagattcctttaa 630  Q
    ||||||||| |||||||||| |||||| |||||||||||  |||||||||||||||||||||||||||||||||||| || ||||| ||| |||||||||    
T  21630077 ggttatactgttcgtggtgtatatgacttgttgacatcacaggaacaacctcatgttcatcaaaatatggagttaatttggcataaccaggttcctttaa 21630176  T
Q  631 aagtttctatccttgcttggcg 652  Q
    ||||||||||||||| ||||||    
T  21630177 aagtttctatccttgtttggcg 21630198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 531 - 660
Target Start/End: Original strand, 10577219 - 10577348
Alignment:
Q  531 ggttatactcttcgtggtgtctatgacatgttgacatcatgggaacaacctcatgttcatcaaaatatggagttaatctgacataaacagattcctttaa 630  Q
    ||||||||| || ||||||| |||||| | |||||||||  ||||||||||||||||||||||||||| |||||||| || ||||||||| |||||||||    
T  10577219 ggttatactgtttgtggtgtatatgactttttgacatcacaggaacaacctcatgttcatcaaaatatagagttaatttggcataaacaggttcctttaa 10577318  T
Q  631 aagtttctatccttgcttggcggctgttga 660  Q
    |||||| ||||||||||||||| |||||||    
T  10577319 aagtttatatccttgcttggcgactgttga 10577348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 531 - 660
Target Start/End: Original strand, 17573625 - 17573754
Alignment:
Q  531 ggttatactcttcgtggtgtctatgacatgttgacatcatgggaacaacctcatgttcatcaaaatatggagttaatctgacataaacagattcctttaa 630  Q
    ||||||||| ||||| |||  |||||| |||||||||||  |||||||||||||||| ||||||||||||||||||| || ||||||||| |||||||||    
T  17573625 ggttatactgttcgttgtgcatatgacttgttgacatcacaggaacaacctcatgtttatcaaaatatggagttaatttggcataaacaggttcctttaa 17573724  T
Q  631 aagtttctatccttgcttggcggctgttga 660  Q
    ||| |||||||||||||||||| |||||||    
T  17573725 aagattctatccttgcttggcgactgttga 17573754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 520 - 660
Target Start/End: Complemental strand, 11462588 - 11462453
Alignment:
Q  520 atcagattagaggttatactcttcgtggtgtctatgacatgttgacatcatgggaacaacctcatgttcatcaaaatatggagttaatctgacataaaca 619  Q
    |||| |||||| | |||| | |||||||||| ||||||||||||||||||  ||||||||  ||| |||||||||||||||||||||||||  |||||||    
T  11462588 atcatattagatgctatattgttcgtggtgtatatgacatgttgacatcacaggaacaacaacatattcatcaaaatatggagttaatctggtataaaca 11462489  T
Q  620 gattcctttaaaagtttctatccttgcttggcggctgttga 660  Q
    |      ||||||||||| ||||||||||||| ||||||||    
T  11462488 g-----gttaaaagtttcaatccttgcttggcagctgttga 11462453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 589 - 660
Target Start/End: Original strand, 17579109 - 17579180
Alignment:
Q  589 atcaaaatatggagttaatctgacataaacagattcctttaaaagtttctatccttgcttggcggctgttga 660  Q
    ||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  17579109 atcaaaatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgcttggcgactgttga 17579180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 541 - 660
Target Start/End: Original strand, 15958793 - 15958912
Alignment:
Q  541 ttcgtggtgtctatgacatgttgacatcatgggaacaacctcatgttcatcaaaatatggagttaatctgacataaacagattcctttaaaagtttctat 640  Q
    |||| ||||| | ||||||| ||||||||  |||||||| |||  | |||| ||||||| ||||||| || ||||||||| ||||| | ||||| |||||    
T  15958793 ttcgcggtgtgtctgacatgctgacatcacaggaacaacttcagttacatccaaatatgaagttaatatggcataaacaggttcctcttaaagtctctat 15958892  T
Q  641 ccttgcttggcggctgttga 660  Q
     |||||||||||||| ||||    
T  15958893 tcttgcttggcggcttttga 15958912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 589 - 652
Target Start/End: Original strand, 18651262 - 18651325
Alignment:
Q  589 atcaaaatatggagttaatctgacataaacagattcctttaaaagtttctatccttgcttggcg 652  Q
    ||||||||||||||||||| || ||||||||| ||||| | ||||| |||||||||||||||||    
T  18651262 atcaaaatatggagttaatttggcataaacaggttcctctcaaagtctctatccttgcttggcg 18651325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 127
Target Start/End: Original strand, 2516303 - 2516365
Alignment:
Q  65 taaatgcaagtaaatttataaatattgatgacgtcattttagataaagatcctagtagtggtg 127  Q
    ||||| ||||||||||||| ||||||||| | |||||| ||||||||||| |||| |||||||    
T  2516303 taaatccaagtaaatttattaatattgataatgtcattatagataaagattctaggagtggtg 2516365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 594 - 652
Target Start/End: Complemental strand, 2553744 - 2553686
Alignment:
Q  594 aatatggagttaatctgacataaacagattcctttaaaagtttctatccttgcttggcg 652  Q
    |||||||||||||| || ||||||||| ||||| | ||||| |||||||||||||||||    
T  2553744 aatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcg 2553686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 543 - 649
Target Start/End: Original strand, 24767406 - 24767512
Alignment:
Q  543 cgtggtgtctatgacatgttgacatcatgggaacaacctcatgttcatcaaaatatggagttaatctgacataaacagattcctttaaaagtttctatcc 642  Q
    ||||| |||||||||||| ||||||||  ||| || ||  |  | |||||||||||||||||||| |  ||||||||| ||||| | ||||| |||||||    
T  24767406 cgtggagtctatgacatgctgacatcacaggagcagccctagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatcc 24767505  T
Q  643 ttgcttg 649  Q
    |||||||    
T  24767506 ttgcttg 24767512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 588 - 652
Target Start/End: Complemental strand, 12734238 - 12734174
Alignment:
Q  588 catcaaaatatggagttaatctgacataaacagattcctttaaaagtttctatccttgcttggcg 652  Q
    ||||| |||||||| ||||| || ||||||||| ||||| | ||||| |||||||||||||||||    
T  12734238 catcataatatggatttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcg 12734174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 545 - 652
Target Start/End: Complemental strand, 13937856 - 13937749
Alignment:
Q  545 tggtgtctatgacatgttgacatcatgggaacaacctcatgtt-catcaaaatatggagttaatctgacataaacagattcctttaaaagtttctatcct 643  Q
    |||||| ||||| |||||||| ||   ||||||||| |||||| ||||||||||||||||| || || || |||||| | ||||| ||||| |||||  |    
T  13937856 tggtgtgtatgatatgttgacttcgcaggaacaacc-catgttacatcaaaatatggagttgatttggcacaaacaggtgcctttgaaagtgtctatttt 13937758  T
Q  644 tgcttggcg 652  Q
    |||||||||    
T  13937757 tgcttggcg 13937749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 98; Significance: 6e-48; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 527 - 660
Target Start/End: Original strand, 18359058 - 18359191
Alignment:
Q  527 tagaggttatactcttcgtggtgtctatgacatgttgacatcatgggaacaacctcatgttcatcaaaatatggagttaatctgacataaacagattcct 626  Q
    ||||||||||||| |||||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||  ||||||||| |||||    
T  18359058 tagaggttatactgttcgtggtgtatatgacatgttgacatcacaggaacaacctcatgttcatcaaaatatggagttaatctagcataaacaggttcct 18359157  T
Q  627 ttaaaagtttctatccttgcttggcggctgttga 660  Q
    ||||||||||| ||||||||||||||| ||||||    
T  18359158 ttaaaagtttcaatccttgcttggcggttgttga 18359191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 531 - 660
Target Start/End: Complemental strand, 27767212 - 27767083
Alignment:
Q  531 ggttatactcttcgtggtgtctatgacatgttgacatcatgggaacaacctcatgttcatcaaaatatggagttaatctgacataaacagattcctttaa 630  Q
    ||||||||| |||||||||| |||||| |||||||||||  |||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||    
T  27767212 ggttatactgttcgtggtgtatatgacttgttgacatcacaggaacaacctcatgttcatcaaaatatggagttaatttggcataaacaggttcctttaa 27767113  T
Q  631 aagtttctatccttgcttggcggctgttga 660  Q
    |||||| ||||||||||||||| |||||||    
T  27767112 aagtttatatccttgcttggcgactgttga 27767083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 531 - 660
Target Start/End: Original strand, 8300152 - 8300281
Alignment:
Q  531 ggttatactcttcgtggtgtctatgacatgttgacatcatgggaacaacctcatgttcatcaaaatatggagttaatctgacataaacagattcctttaa 630  Q
    ||||||||| |||||||||  |||||| |||||||||||  |||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||    
T  8300152 ggttatactgttcgtggtgcatatgacctgttgacatcacaggaacaacctcatgttcatcaaaatatggagttaatttggcataaacaggttcctttaa 8300251  T
Q  631 aagtttctatccttgcttggcggctgttga 660  Q
    ||||||||||||||| |||||| |||||||    
T  8300252 aagtttctatccttgtttggcgactgttga 8300281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 531 - 660
Target Start/End: Original strand, 25857394 - 25857523
Alignment:
Q  531 ggttatactcttcgtggtgtctatgacatgttgacatcatgggaacaacctcatgttcatcaaaatatggagttaatctgacataaacagattcctttaa 630  Q
    ||||||||| |||||||||  |||||| |||||||||||  ||||||||||| |||||||||||||||||||||||| || ||||||||| |||||||||    
T  25857394 ggttatactgttcgtggtgcatatgacttgttgacatcacaggaacaacctcttgttcatcaaaatatggagttaatttggcataaacaggttcctttaa 25857493  T
Q  631 aagtttctatccttgcttggcggctgttga 660  Q
    |||||||||||||||||||||| |||||||    
T  25857494 aagtttctatccttgcttggcgactgttga 25857523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 531 - 660
Target Start/End: Original strand, 33385344 - 33385473
Alignment:
Q  531 ggttatactcttcgtggtgtctatgacatgttgacatcatgggaacaacctcatgttcatcaaaatatggagttaatctgacataaacagattcctttaa 630  Q
    ||||||||| |||||||||| |||||| |||||||||||  ||||||||||||| |||||||||||||||||||||| || ||||||||| |||| ||||    
T  33385344 ggttatactgttcgtggtgtatatgacttgttgacatcacaggaacaacctcatattcatcaaaatatggagttaatttggcataaacaggttcccttaa 33385443  T
Q  631 aagtttctatccttgcttggcggctgttga 660  Q
    |||||||||||||||||||||| |||||||    
T  33385444 aagtttctatccttgcttggcgactgttga 33385473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 531 - 652
Target Start/End: Complemental strand, 10776935 - 10776813
Alignment:
Q  531 ggttatactcttcgtggtgtctatgacatgttgacatcatgggaacaacctcatgttcatcaaa-atatggagttaatctgacataaacagattccttta 629  Q
    ||||||||| | |||||||| |||||| |||||||||||  ||||||||||||||||||||||| ||||||||||||| || ||||||||| |||| |||    
T  10776935 ggttatactgtccgtggtgtatatgacttgttgacatcacaggaacaacctcatgttcatcaaatatatggagttaatttggcataaacaggttccctta 10776836  T
Q  630 aaagtttctatccttgcttggcg 652  Q
    |||||||||||||||||||||||    
T  10776835 aaagtttctatccttgcttggcg 10776813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 551 - 652
Target Start/End: Original strand, 28535665 - 28535766
Alignment:
Q  551 ctatgacatgttgacatcatgggaacaacctcatgttcatcaaaatatggagttaatctgacataaacagattcctttaaaagtttctatccttgcttgg 650  Q
    |||||||||| ||||||||  ||| || |||||  | |||||||| ||||||||||| || |||| |||| ||||| | |||||||||||||||||||||    
T  28535665 ctatgacatgctgacatcacaggagcagcctcagttacatcaaaacatggagttaatttggcatacacaggttcctctcaaagtttctatccttgcttgg 28535764  T
Q  651 cg 652  Q
    ||    
T  28535765 cg 28535766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 594 - 650
Target Start/End: Complemental strand, 8228133 - 8228077
Alignment:
Q  594 aatatggagttaatctgacataaacagattcctttaaaagtttctatccttgcttgg 650  Q
    |||||||||||||| |||||||||||| ||||| | ||||| |||||||||||||||    
T  8228133 aatatggagttaatttgacataaacaggttcctctcaaagtatctatccttgcttgg 8228077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 593 - 653
Target Start/End: Original strand, 19255154 - 19255214
Alignment:
Q  593 aaatatggagttaatctgacataaacagattcctttaaaagtttctatccttgcttggcgg 653  Q
    ||||||||||||||| || |||||||||||| || | ||||| ||||||||||||||||||    
T  19255154 aaatatggagttaatttggcataaacagatttctctcaaagtatctatccttgcttggcgg 19255214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 543 - 655
Target Start/End: Complemental strand, 42928289 - 42928177
Alignment:
Q  543 cgtggtgtctatgacatgttgacatcatgggaacaacctcatgttcatcaaaatatggagttaatctgacataaacagattcctttaaaagtttctatcc 642  Q
    ||||| |||||||||||| |||||||   |||||| || ||  | |||| ||||||||||||||| ||  |||||||| ||||| | ||||| |||||||    
T  42928289 cgtggagtctatgacatgctgacatcgcaggaacagccccagttacatccaaatatggagttaatttggtataaacaggttcctctcaaagtctctatcc 42928190  T
Q  643 ttgcttggcggct 655  Q
    ||| |||||||||    
T  42928189 ttgtttggcggct 42928177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 551 - 652
Target Start/End: Original strand, 35983781 - 35983882
Alignment:
Q  551 ctatgacatgttgacatcatgggaacaacctcatgttcatcaaaatatggagttaatctgacataaacagattcctttaaaagtttctatccttgcttgg 650  Q
    |||||||||| ||||||||  ||| || |||||  | |||||||| ||||||||||| || | || |||| ||||| | ||||| |||||||||||||||    
T  35983781 ctatgacatgctgacatcacaggagcagcctcagttacatcaaaacatggagttaatttggcttacacaggttcctctcaaagtatctatccttgcttgg 35983880  T
Q  651 cg 652  Q
    ||    
T  35983881 cg 35983882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 594 - 650
Target Start/End: Complemental strand, 23238491 - 23238435
Alignment:
Q  594 aatatggagttaatctgacataaacagattcctttaaaagtttctatccttgcttgg 650  Q
    |||||||||||||| || |||||| || ||||| | |||||||||||||||||||||    
T  23238491 aatatggagttaatttggcataaataggttcctctcaaagtttctatccttgcttgg 23238435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 541 - 641
Target Start/End: Original strand, 27165932 - 27166032
Alignment:
Q  541 ttcgtggtgtctatgacatgttgacatcatgggaacaacctcatgttcatcaaaatatggagttaatctgacataaacagattcctttaaaagtttctat 640  Q
    |||||||||| |||||||||||| |||||  |||||||||  || | |||||||||||||| ||||| || ||  ||||| | ||| ||||||| |||||    
T  27165932 ttcgtggtgtttatgacatgttggcatcacaggaacaacccaatttacatcaaaatatggaattaatttggcaccaacaggtacctctaaaagtctctat 27166031  T
Q  641 c 641  Q
    |    
T  27166032 c 27166032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 520 - 634
Target Start/End: Complemental strand, 24408109 - 24407995
Alignment:
Q  520 atcagattagaggttatactcttcgtggtgtctatgacatgttgacatcatgggaacaacctcatgtt-catcaaaatatggagttaatctgacataaac 618  Q
    |||||||| | || |||||  |||||||||| ||||| |||||||||||   ||||||||| |||||| ||||||| ||||||||| || || |||||||    
T  24408109 atcagattggtgggtatacggttcgtggtgtgtatgatatgttgacatcgcaggaacaacc-catgttacatcaaagtatggagttgatttggcataaac 24408011  T
Q  619 agattcctttaaaagt 634  Q
    || | ||||| |||||    
T  24408010 aggtacctttgaaagt 24407995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 594 - 652
Target Start/End: Original strand, 27117194 - 27117252
Alignment:
Q  594 aatatggagttaatctgacataaacagattcctttaaaagtttctatccttgcttggcg 652  Q
    |||||||| ||||| || ||||||||| ||||| | ||||| |||||||||||||||||    
T  27117194 aatatggacttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcg 27117252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 552 - 646
Target Start/End: Complemental strand, 31641660 - 31641567
Alignment:
Q  552 tatgacatgttgacatcatgggaacaacctcatgttcatcaaaatatggagttaatctgacataaacagattcctttaaaagtttctatccttgc 646  Q
    ||||||||| ||||||||  ||| || |||||  | |||||||| ||||||||||| || |||| |||| ||||| | |||||||||||||||||    
T  31641660 tatgacatgctgacatcacaggagcagcctcacttacatcaaaacatggagttaatttggcatacacaggttcctct-aaagtttctatccttgc 31641567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 544 - 649
Target Start/End: Original strand, 18089744 - 18089849
Alignment:
Q  544 gtggtgtctatgacatgttgacatcatgggaacaacctcatgttcatcaaaatatggagttaatctgacataaacagattcctttaaaagtttctatcct 643  Q
    ||||||| |||||||||||||||   | ||||||||| | | |||| |||||| |||||||||| || || |||||| | || || ||||| |||||| |    
T  18089744 gtggtgtgtatgacatgttgacagtgtaggaacaaccccttattcaacaaaatttggagttaatttggcacaaacaggtaccgttgaaagtctctatctt 18089843  T
Q  644 tgcttg 649  Q
    ||||||    
T  18089844 tgcttg 18089849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 541 - 652
Target Start/End: Complemental strand, 33169818 - 33169707
Alignment:
Q  541 ttcgtggtgtctatgacatgttgacatcatgggaacaacctcatgtt-catcaaaatatggagttaatctgacataaacagattcctttaaaagtttcta 639  Q
    |||||||||| ||||| ||| |||| || | |||| |||| |||||| ||||||||||||||||| || || || |||||| | ||||| ||||| ||||    
T  33169818 ttcgtggtgtgtatgatatgctgacttcgtaggaaaaacc-catgttacatcaaaatatggagttgatttggcacaaacaggtgcctttgaaagtgtcta 33169720  T
Q  640 tccttgcttggcg 652  Q
    |  ||||||||||    
T  33169719 tttttgcttggcg 33169707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 6e-48; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 525 - 658
Target Start/End: Original strand, 10999915 - 11000048
Alignment:
Q  525 attagaggttatactcttcgtggtgtctatgacatgttgacatcatgggaacaacctcatgttcatcaaaatatggagttaatctgacataaacagattc 624  Q
    ||||||||||||| | |||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||| ||     
T  10999915 attagaggttatattgttcgtggtgtatatgacatgttgacatcataggaacaatctcatgttcatcaaaatatggagttaatctgccataaacaggttt 11000014  T
Q  625 ctttaaaagtttctatccttgcttggcggctgtt 658  Q
    |||||||||||||||||||||||||| |||||||    
T  11000015 ctttaaaagtttctatccttgcttggtggctgtt 11000048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 520 - 660
Target Start/End: Complemental strand, 14439933 - 14439793
Alignment:
Q  520 atcagattagaggttatactcttcgtggtgtctatgacatgttgacatcatgggaacaacctcatgttcatcaaaatatggagttaatctgacataaaca 619  Q
    ||||||||| |||||||| | |||||||||| ||||||||||||||||||  ||||| ||||||||||||||||| ||||||||||||||| ||||||||    
T  14439933 atcagattaaaggttatattgttcgtggtgtatatgacatgttgacatcacaggaacgacctcatgttcatcaaactatggagttaatctggcataaaca 14439834  T
Q  620 gattcctttaaaagtttctatccttgcttggcggctgttga 660  Q
    | |||||||||||||||||||| | ||||| || |||||||    
T  14439833 ggttcctttaaaagtttctatcttggcttgacgactgttga 14439793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 520 - 660
Target Start/End: Complemental strand, 12645717 - 12645577
Alignment:
Q  520 atcagattagaggttatactcttcgtggtgtctatgacatgttgacatcatgggaacaacctcatgttcatcaaaatatggagttaatctgacataaaca 619  Q
    |||||| | |||| |||||| |||||||||| ||||| ||||||||||||  |||| | ||||||||| ||||||||||||||||||| || ||||||||    
T  12645717 atcagactggaggatatactgttcgtggtgtgtatgatatgttgacatcacaggaaaaccctcatgtttatcaaaatatggagttaatttggcataaaca 12645618  T
Q  620 gattcctttaaaagtttctatccttgcttggcggctgttga 660  Q
    | || || |||||||||| ||||||||||||||||| ||||    
T  12645617 ggtttctctaaaagtttcaatccttgcttggcggctattga 12645577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 531 - 658
Target Start/End: Original strand, 38604344 - 38604471
Alignment:
Q  531 ggttatactcttcgtggtgtctatgacatgttgacatcatgggaacaacctcatgttcatcaaaatatggagttaatctgacataaacagattcctttaa 630  Q
    ||||| ||| |||| ||||| ||||||||||||||||||  |||||||||| || ||||||||||||||||||||||||| ||||||||  | ||| |||    
T  38604344 ggttacactgttcggggtgtgtatgacatgttgacatcacaggaacaacctaattttcatcaaaatatggagttaatctggcataaacaagtacctctaa 38604443  T
Q  631 aagtttctatccttgcttggcggctgtt 658  Q
    ||||||| |||||||| |||| ||||||    
T  38604444 aagtttcaatccttgcatggctgctgtt 38604471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 552 - 660
Target Start/End: Complemental strand, 40176817 - 40176709
Alignment:
Q  552 tatgacatgttgacatcatgggaacaacctcatgttcatcaaaatatggagttaatctgacataaacagattcctttaaaagtttctatccttgcttggc 651  Q
    |||||| | |||||||||  ||||||||||||| |||||||||||||||||||| |||| || |||||| | ||| ||||||||||  ||||||||||||    
T  40176817 tatgacttattgacatcacaggaacaacctcatattcatcaaaatatggagttagtctggcacaaacaggtacctctaaaagtttcagtccttgcttggc 40176718  T
Q  652 ggctgttga 660  Q
    || ||||||    
T  40176717 ggttgttga 40176709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 552 - 655
Target Start/End: Complemental strand, 41207165 - 41207062
Alignment:
Q  552 tatgacatgttgacatcatgggaacaacctcatgttcatcaaaatatggagttaatctgacataaacagattcctttaaaagtttctatccttgcttggc 651  Q
    ||||||||| |||||||   |||||| |||||  | |||| ||||||||||||||| || ||||||||| ||||| | ||||| ||||||||||||||||    
T  41207165 tatgacatgctgacatcgcaggaacatcctcagttacatccaaatatggagttaatttggcataaacaggttcctctcaaagtctctatccttgcttggc 41207066  T
Q  652 ggct 655  Q
    ||||    
T  41207065 ggct 41207062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 593 - 660
Target Start/End: Original strand, 17764994 - 17765061
Alignment:
Q  593 aaatatggagttaatctgacataaacagattcctttaaaagtttctatccttgcttggcggctgttga 660  Q
    ||||||||||||||| || |||||||||  |||| | ||||| ||||| |||||||||||||| ||||    
T  17764994 aaatatggagttaatatggcataaacaggctcctcttaaagtctctattcttgcttggcggctattga 17765061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 596 - 660
Target Start/End: Complemental strand, 28252825 - 28252761
Alignment:
Q  596 tatggagttaatctgacataaacagattcctttaaaagtttctatccttgcttggcggctgttga 660  Q
    |||||| ||||| || ||||||||| | ||| ||||||| ||||| |||||||||||||| ||||    
T  28252825 tatggaattaatttggcataaacaggtacctctaaaagtatctattcttgcttggcggcttttga 28252761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 97; Significance: 3e-47; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 520 - 652
Target Start/End: Complemental strand, 2170523 - 2170391
Alignment:
Q  520 atcagattagaggttatactcttcgtggtgtctatgacatgttgacatcatgggaacaacctcatgttcatcaaaatatggagttaatctgacataaaca 619  Q
    |||||||||  ||||||||| | |||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  2170523 atcagattactggttatactgtccgtggtgtatatgacatgttgacatcacaggaacaacctcatgttcatcaaaatatggagttaatctggcataaaca 2170424  T
Q  620 gattcctttaaaagtttctatccttgcttggcg 652  Q
    | |||||||||||||||||||||||||||||||    
T  2170423 ggttcctttaaaagtttctatccttgcttggcg 2170391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 531 - 660
Target Start/End: Complemental strand, 20824466 - 20824337
Alignment:
Q  531 ggttatactcttcgtggtgtctatgacatgttgacatcatgggaacaacctcatgttcatcaaaatatggagttaatctgacataaacagattcctttaa 630  Q
    ||||||||| ||| |||||  |||||| |||||||||||  |||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||    
T  20824466 ggttatactgttcatggtgcatatgacttgttgacatcacaggaacaacctcatgttcatcaaaatatggagttaatttggcataaacaggttcctttaa 20824367  T
Q  631 aagtttctatccttgcttggcggctgttga 660  Q
    |||||||||||||||||||||| |||||||    
T  20824366 aagtttctatccttgcttggcgactgttga 20824337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 531 - 660
Target Start/End: Complemental strand, 37434302 - 37434173
Alignment:
Q  531 ggttatactcttcgtggtgtctatgacatgttgacatcatgggaacaacctcatgttcatcaaaatatggagttaatctgacataaacagattcctttaa 630  Q
    ||||||||| |||||||||| |||||| |||||||||||  |||||||||||||||||||||||||||||||||||| || ||||||||  |||||||||    
T  37434302 ggttatactgttcgtggtgtatatgacttgttgacatcacaggaacaacctcatgttcatcaaaatatggagttaatttggcataaacatgttcctttaa 37434203  T
Q  631 aagtttctatccttgcttggcggctgttga 660  Q
    |||| ||||| ||||||||||| |||||||    
T  37434202 aagtctctattcttgcttggcgactgttga 37434173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 520 - 660
Target Start/End: Complemental strand, 43270634 - 43270491
Alignment:
Q  520 atcagattagaggttatactcttcgtggtgtctatgacatgttgacatcatgg---gaacaacctcatgttcatcaaaatatggagttaatctgacataa 616  Q
    |||| |||| |||||||||| |||||||||| ||||||||||||||||||      |||||||||||||||||||||||||||||||| ||||| |||||    
T  43270634 atcatattaaaggttatactgttcgtggtgtatatgacatgttgacatcacatattgaacaacctcatgttcatcaaaatatggagttcatctggcataa 43270535  T
Q  617 acagattcctttaaaagtttctatccttgcttggcggctgttga 660  Q
    |||| ||||||||||||||||||||||| ||||||| |||||||    
T  43270534 acaggttcctttaaaagtttctatccttacttggcgactgttga 43270491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 527 - 660
Target Start/End: Complemental strand, 13200297 - 13200164
Alignment:
Q  527 tagaggttatactcttcgtggtgtctatgacatgttgacatcatgggaacaacctcatgttcatcaaaatatggagttaatctgacataaacagattcct 626  Q
    |||||| |||||| |||||||||| ||||| ||||||||||||  |||||||||||||||||||||||||||||||||| | || ||||||||| |||||    
T  13200297 tagaggctatactgttcgtggtgtgtatgatatgttgacatcacaggaacaacctcatgttcatcaaaatatggagttagtttggcataaacaggttcct 13200198  T
Q  627 ttaaaagtttctatccttgcttggcggctgttga 660  Q
     |||||||||| ||||||||||||| ||| ||||    
T  13200197 ctaaaagtttcaatccttgcttggcagctattga 13200164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 531 - 652
Target Start/End: Complemental strand, 17699652 - 17699531
Alignment:
Q  531 ggttatactcttcgtggtgtctatgacatgttgacatcatgggaacaacctcatgttcatcaaaatatggagttaatctgacataaacagattcctttaa 630  Q
    ||||||||| ||||||||||  ||||| |||||||||||   ||||||||||||||||||||||||||||||||||| || ||||||||| |||| ||||    
T  17699652 ggttatactgttcgtggtgttcatgacttgttgacatcacatgaacaacctcatgttcatcaaaatatggagttaatttggcataaacaggttcccttaa 17699553  T
Q  631 aagtttctatccttgcttggcg 652  Q
    ||||||||||||||||||||||    
T  17699552 aagtttctatccttgcttggcg 17699531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 520 - 642
Target Start/End: Original strand, 42177548 - 42177670
Alignment:
Q  520 atcagattagaggttatactcttcgtggtgtctatgacatgttgacatcatgggaacaacctcatgttcatcaaaatatggagttaatctgacataaaca 619  Q
    |||||||||||||||||||| | |||||||| ||||||||||||||||||   ||||||| | |||||||||||||| |||||||||| || ||| ||||    
T  42177548 atcagattagaggttatactgtacgtggtgtatatgacatgttgacatcacatgaacaactttatgttcatcaaaatttggagttaatatggcattaaca 42177647  T
Q  620 gattcctttaaaagtttctatcc 642  Q
    | |||||||||||||||||||||    
T  42177648 ggttcctttaaaagtttctatcc 42177670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 102
Target Start/End: Original strand, 43396583 - 43396663
Alignment:
Q  24 agtaaaataatcgtgaagatatagaaggaaaaaacata--aggtaaatgcaagtaaatttataaatattgatgacgtcatt 102  Q
    ||||||| ||||||||||||||  |||||||||| |||  ||||||||||| |||||||||| ||||||||||| ||||||    
T  43396583 agtaaaaaaatcgtgaagatatgaaaggaaaaaaaatatgaggtaaatgcaggtaaatttattaatattgatgaggtcatt 43396663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 541 - 660
Target Start/End: Complemental strand, 25090547 - 25090428
Alignment:
Q  541 ttcgtggtgtctatgacatgttgacatcatgggaacaacctcatgttcatcaaaatatggagttaatctgacataaacagattcctttaaaagtttctat 640  Q
    ||||||| || |||||| | |||||||||   |||||  ||||| ||||||| |||||||||||| |||  || |||||| | ||| |||||||||| ||    
T  25090547 ttcgtggggtatatgacttattgacatcacatgaacactctcatcttcatcacaatatggagttagtctagcacaaacaggtacctctaaaagtttcaat 25090448  T
Q  641 ccttgcttggcggctgttga 660  Q
    ||||||||||||| ||||||    
T  25090447 ccttgcttggcggttgttga 25090428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 544 - 652
Target Start/End: Original strand, 41665352 - 41665460
Alignment:
Q  544 gtggtgtctatgacatgttgacatcatgggaacaacctcatgttcatcaaaatatggagttaatctgacataaacagattcctttaaaagtttctatcct 643  Q
    |||| |||||||||||| ||||||||  ||| || || ||  | |||||  ||||||||||||| || ||||||||| ||||| | ||||| ||||||||    
T  41665352 gtggggtctatgacatgctgacatcacaggagcagccccaattacatcatcatatggagttaatttggcataaacaggttcctctcaaagtatctatcct 41665451  T
Q  644 tgcttggcg 652  Q
    |||||||||    
T  41665452 tgcttggcg 41665460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 541 - 646
Target Start/End: Complemental strand, 9922761 - 9922656
Alignment:
Q  541 ttcgtggtgtctatgacatgttgacatcatgggaacaacctcatgttcatcaaaatatggagttaatctgacataaacagattcctttaaaagtttctat 640  Q
    ||||||| | |||||||||| ||||||||  ||| || |||||  | ||||||||  |||||||||| || |||| |||| ||||| | |||||||||||    
T  9922761 ttcgtggagcctatgacatgctgacatcacaggagcagcctcacttacatcaaaacttggagttaatttggcatacacaggttcctctcaaagtttctat 9922662  T
Q  641 ccttgc 646  Q
    ||||||    
T  9922661 ccttgc 9922656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 543 - 652
Target Start/End: Complemental strand, 13396546 - 13396437
Alignment:
Q  543 cgtggtgtctatgacatgttgacatcatgggaacaacctcatgttcatcaaaatatggagttaatctgacataaacagattcctttaaaagtttctatcc 642  Q
    ||||| |||||||||||| ||||||||  ||| || || ||  | |||||  ||||||||||||| || ||||||||  ||||| | ||||| |||||||    
T  13396546 cgtggggtctatgacatgctgacatcacaggagcagccccaattacatcatcatatggagttaatttggcataaacaagttcctctcaaagtatctatcc 13396447  T
Q  643 ttgcttggcg 652  Q
    ||||||||||    
T  13396446 ttgcttggcg 13396437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 598 - 650
Target Start/End: Complemental strand, 32266667 - 32266615
Alignment:
Q  598 tggagttaatctgacataaacagattcctttaaaagtttctatccttgcttgg 650  Q
    |||||||||| || ||||||||| ||||| | ||||| |||||||||||||||    
T  32266667 tggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttgg 32266615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 97; Significance: 3e-47; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 520 - 660
Target Start/End: Complemental strand, 37254939 - 37254799
Alignment:
Q  520 atcagattagaggttatactcttcgtggtgtctatgacatgttgacatcatgggaacaacctcatgttcatcaaaatatggagttaatctgacataaaca 619  Q
    ||||||||||||| ||| || |||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  37254939 atcagattagaggctatcctgttcgtggtgtatacgacatgttgacatcacgggaacaacctcatgttcatcaaaatatggagttaatctggcataaaca 37254840  T
Q  620 gattcctttaaaagtttctatccttgcttggcggctgttga 660  Q
    | || ||||||||||||| ||||||||||||||| ||||||    
T  37254839 ggttactttaaaagtttcaatccttgcttggcggttgttga 37254799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 531 - 660
Target Start/End: Complemental strand, 18532798 - 18532669
Alignment:
Q  531 ggttatactcttcgtggtgtctatgacatgttgacatcatgggaacaacctcatgttcatcaaaatatggagttaatctgacataaacagattcctttaa 630  Q
    ||||||| | |||||||||| |||||| |||||||||||   |||||||||||||||||||||||||||||||||||||  ||||||||| |||||||||    
T  18532798 ggttatattgttcgtggtgtatatgacttgttgacatcacatgaacaacctcatgttcatcaaaatatggagttaatctcgcataaacaggttcctttaa 18532699  T
Q  631 aagtttctatccttgcttggcggctgttga 660  Q
    |||||| ||||||||||||||| |||||||    
T  18532698 aagtttatatccttgcttggcgactgttga 18532669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 520 - 660
Target Start/End: Complemental strand, 25619646 - 25619500
Alignment:
Q  520 atcagattagaggttatactcttcgtggtgtctatgacatgttgacatcatgggaacaacctcatgt------tcatcaaaatatggagttaatctgaca 613  Q
    |||||||||||||||||| | |  ||||||| ||||||||||| | ||||  |||||||||||||||      ||||||||||||||||||||| || ||    
T  25619646 atcagattagaggttatattgtctgtggtgtatatgacatgtttatatcacaggaacaacctcatgtacatgttcatcaaaatatggagttaatatggca 25619547  T
Q  614 taaacagattcctttaaaagtttctatccttgcttggcggctgttga 660  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||    
T  25619546 taaacaggttcctttaaaagtttctatccttgcttggcggttgttga 25619500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 543 - 652
Target Start/End: Original strand, 235419 - 235528
Alignment:
Q  543 cgtggtgtctatgacatgttgacatcatgggaacaacctcatgttcatcaaaatatggagttaatctgacataaacagattcctttaaaagtttctatcc 642  Q
    ||||| |||||||||||||||||||||  ||| || || ||  | |||||||||||||||||||| || ||||||||| ||| | | ||||| |||||||    
T  235419 cgtggagtctatgacatgttgacatcacaggagcagccccagttacatcaaaatatggagttaatttggcataaacaggttcatctcaaagtctctatcc 235518  T
Q  643 ttgcttggcg 652  Q
    ||||||||||    
T  235519 ttgcttggcg 235528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 543 - 652
Target Start/End: Original strand, 11277234 - 11277343
Alignment:
Q  543 cgtggtgtctatgacatgttgacatcatgggaacaacctcatgttcatcaaaatatggagttaatctgacataaacagattcctttaaaagtttctatcc 642  Q
    ||||| |||||||| ||| ||||||||  ||| ||||| ||  | || || |||||||||||||| || ||||||||| ||||| | ||||| |||||||    
T  11277234 cgtggagtctatgatatgctgacatcacaggagcaaccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatcc 11277333  T
Q  643 ttgcttggcg 652  Q
    ||||||||||    
T  11277334 ttgcttggcg 11277343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 543 - 652
Target Start/End: Complemental strand, 47877141 - 47877032
Alignment:
Q  543 cgtggtgtctatgacatgttgacatcatgggaacaacctcatgttcatcaaaatatggagttaatctgacataaacagattcctttaaaagtttctatcc 642  Q
    ||||| || ||||||||| ||||||||  ||| || || ||  | |||||||||| ||||||||| || ||||||||| ||||| | ||||| |||||||    
T  47877141 cgtggagtttatgacatgctgacatcacaggagcagccccagttacatcaaaatagggagttaatttggcataaacaggttcctctcaaagtatctatcc 47877042  T
Q  643 ttgcttggcg 652  Q
    ||||||||||    
T  47877041 ttgcttggcg 47877032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 541 - 652
Target Start/End: Complemental strand, 17720795 - 17720684
Alignment:
Q  541 ttcgtggtgtctatgacatgttgacatcatgggaacaacctcatgttcatcaaaatatggagttaatctgacataaacagattcctttaaaagtttctat 640  Q
    ||||||| | |||||||||| ||||||||  ||| || |||||  | ||||||||  |||||||||| || |||| |||| ||||| | |||||||||||    
T  17720795 ttcgtggagcctatgacatgctgacatcacaggagcagcctcacttacatcaaaacttggagttaatttggcatacacaggttcctctcaaagtttctat 17720696  T
Q  641 ccttgcttggcg 652  Q
    |||||| |||||    
T  17720695 ccttgcatggcg 17720684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 64 - 150
Target Start/End: Original strand, 31023543 - 31023629
Alignment:
Q  64 gtaaatgcaagtaaatttataaatattgatgacgtcattttagataaagatcctagtagtggtgtttcaaatgttgcataaaaaatt 150  Q
    ||||||||||| |||||||| ||| |||||||  ||||   |||||||||| |||| ||||||| ||||  |||||||| |||||||    
T  31023543 gtaaatgcaagaaaatttattaattttgatgagatcatcaaagataaagattctaggagtggtggttcatgtgttgcattaaaaatt 31023629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 596 - 649
Target Start/End: Complemental strand, 29968080 - 29968027
Alignment:
Q  596 tatggagttaatctgacataaacagattcctttaaaagtttctatccttgcttg 649  Q
    |||||||||||| || ||||||||| ||||| | ||||| ||||||||||||||    
T  29968080 tatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttg 29968027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 6e-45; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 520 - 660
Target Start/End: Complemental strand, 20002906 - 20002766
Alignment:
Q  520 atcagattagaggttatactcttcgtggtgtctatgacatgttgacatcatgggaacaacctcatgttcatcaaaatatggagttaatctgacataaaca 619  Q
    ||||||||||||| |||||| |||||||||| ||||||||||||||||||   ||||||||||||||| ||||||||||||||||||| || ||||||||    
T  20002906 atcagattagaggctatactgttcgtggtgtttatgacatgttgacatcacacgaacaacctcatgttaatcaaaatatggagttaatttggcataaaca 20002807  T
Q  620 gattcctttaaaagtttctatccttgcttggcggctgttga 660  Q
    | ||| |||||||||||||||| ||||||||||||||||||    
T  20002806 ggttcttttaaaagtttctatcattgcttggcggctgttga 20002766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 531 - 660
Target Start/End: Complemental strand, 12697983 - 12697854
Alignment:
Q  531 ggttatactcttcgtggtgtctatgacatgttgacatcatgggaacaacctcatgttcatcaaaatatggagttaatctgacataaacagattcctttaa 630  Q
    ||||||||| |||||||||| |||||| |||||||||||  |||||||||||||||||||||||||||| | ||||| || ||||||||| |||||||||    
T  12697983 ggttatactgttcgtggtgtatatgacttgttgacatcacaggaacaacctcatgttcatcaaaatatgaaattaatttggcataaacaggttcctttaa 12697884  T
Q  631 aagtttctatccttgcttggcggctgttga 660  Q
    |||||||||||||||||||||| |||||||    
T  12697883 aagtttctatccttgcttggcgactgttga 12697854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 531 - 660
Target Start/End: Original strand, 45472679 - 45472808
Alignment:
Q  531 ggttatactcttcgtggtgtctatgacatgttgacatcatgggaacaacctcatgttcatcaaaatatggagttaatctgacataaacagattcctttaa 630  Q
    ||||||||| |||||||||| |||||| |||||||||||  ||||| |||||||||||||||||||||||||||||| || ||||||||| |||||||||    
T  45472679 ggttatactgttcgtggtgtatatgacttgttgacatcacaggaaccacctcatgttcatcaaaatatggagttaatttggcataaacaggttcctttaa 45472778  T
Q  631 aagtttctatccttgcttggcggctgttga 660  Q
    ||||||||||||||| |||||| |||||||    
T  45472779 aagtttctatccttgtttggcgactgttga 45472808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 520 - 660
Target Start/End: Original strand, 55725645 - 55725785
Alignment:
Q  520 atcagattagaggttatactcttcgtggtgtctatgacatgttgacatcatgggaacaacctcatgttcatcaaaatatggagttaatctgacataaaca 619  Q
    |||||| | |||| |||||| ||| |||||| ||||| ||||||||||||  |||||||||||||||| ||||||||||||||||||| || ||||||||    
T  55725645 atcagactggaggatatactgttcatggtgtgtatgatatgttgacatcacaggaacaacctcatgtttatcaaaatatggagttaatttggcataaaca 55725744  T
Q  620 gattcctttaaaagtttctatccttgcttggcggctgttga 660  Q
      ||||| |||||||||| ||||||||||||||||| ||||    
T  55725745 agttcctctaaaagtttcaatccttgcttggcggctattga 55725785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 531 - 652
Target Start/End: Complemental strand, 8361270 - 8361149
Alignment:
Q  531 ggttatactcttcgtggtgtctatgacatgttgacatcatgggaacaacctcatgttcatcaaaatatggagttaatctgacataaacagattcctttaa 630  Q
    ||||||| | |||||||||| |||||  ||||| |||||  |||||||||||||||||||||||||||||||||||| || ||||||||| |||| ||||    
T  8361270 ggttatattgttcgtggtgtatatgatttgttgccatcacaggaacaacctcatgttcatcaaaatatggagttaatttggcataaacaggttcccttaa 8361171  T
Q  631 aagtttctatccttgcttggcg 652  Q
    ||||||||||||||| ||||||    
T  8361170 aagtttctatccttgtttggcg 8361149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 534 - 652
Target Start/End: Original strand, 2822010 - 2822128
Alignment:
Q  534 tatactcttcgtggtgtctatgacatgttgacatcatgggaacaacctcatgttcatcaaaatatggagttaatctgacataaacagattcctttaaaag 633  Q
    |||||| ||| ||| || |||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||| || |||||| | ||| ||||||    
T  2822010 tatactgttcatggggtatatgacttgttgacatcataggaacaacctcatattcatcaaaatatggagttaatctggcacaaacaggtacctctaaaag 2822109  T
Q  634 tttctatccttgcttggcg 652  Q
    ||||  ||| |||||||||    
T  2822110 tttcagtccatgcttggcg 2822128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 543 - 650
Target Start/End: Complemental strand, 15740379 - 15740272
Alignment:
Q  543 cgtggtgtctatgacatgttgacatcatgggaacaacctcatgttcatcaaaatatggagttaatctgacataaacagattcctttaaaagtttctatcc 642  Q
    ||||| |||||||| ||||||||||||| ||| || || ||  | || || |||||||||||||| || ||||||||| ||||| | ||||| |||||||    
T  15740379 cgtggagtctatgatatgttgacatcataggagcagccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatcc 15740280  T
Q  643 ttgcttgg 650  Q
    ||||||||    
T  15740279 ttgcttgg 15740272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 543 - 652
Target Start/End: Complemental strand, 7404071 - 7403962
Alignment:
Q  543 cgtggtgtctatgacatgttgacatcatgggaacaacctcatgttcatcaaaatatggagttaatctgacataaacagattcctttaaaagtttctatcc 642  Q
    ||||| |||||||||||| ||||||||  ||| || || ||  | |||||||||||| ||||||| || ||||||||  ||| ||| ||||| |||||||    
T  7404071 cgtggagtctatgacatgctgacatcacaggagcagccccagttacatcaaaatatgaagttaatttggcataaacaagttcatttcaaagtctctatcc 7403972  T
Q  643 ttgcttggcg 652  Q
    ||||||||||    
T  7403971 ttgcttggcg 7403962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 543 - 652
Target Start/End: Complemental strand, 19755425 - 19755316
Alignment:
Q  543 cgtggtgtctatgacatgttgacatcatgggaacaacctcatgttcatcaaaatatggagttaatctgacataaacagattcctttaaaagtttctatcc 642  Q
    ||||| |||||||||||| ||||||||   || || || ||  |||||||  ||||||||||||| || ||||||||| ||||| | ||||| |||||||    
T  19755425 cgtggggtctatgacatgctgacatcacaagagcagccccaatttcatcatcatatggagttaatttggcataaacaggttcctctcaaagtatctatcc 19755326  T
Q  643 ttgcttggcg 652  Q
    ||||||||||    
T  19755325 ttgcttggcg 19755316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 543 - 652
Target Start/End: Original strand, 19784381 - 19784490
Alignment:
Q  543 cgtggtgtctatgacatgttgacatcatgggaacaacctcatgttcatcaaaatatggagttaatctgacataaacagattcctttaaaagtttctatcc 642  Q
    ||||| |||||||||||| ||||||||   || || || ||  |||||||  ||||||||||||| || ||||||||| ||||| | ||||| |||||||    
T  19784381 cgtggggtctatgacatgctgacatcacaagagcagccccaatttcatcatcatatggagttaatttggcataaacaggttcctctcaaagtatctatcc 19784480  T
Q  643 ttgcttggcg 652  Q
    ||||||||||    
T  19784481 ttgcttggcg 19784490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 551 - 650
Target Start/End: Original strand, 1828530 - 1828629
Alignment:
Q  551 ctatgacatgttgacatcatgggaacaacctcatgttcatcaaaatatggagttaatctgacataaacagattcctttaaaagtttctatccttgcttgg 650  Q
    |||||| ||||||||||||  ||| || || ||  | ||||| |||||||||||||| || ||||||||| ||||| | ||||| |||||||||||||||    
T  1828530 ctatgatatgttgacatcacaggagcagccccagttacatcataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttgg 1828629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 544 - 655
Target Start/End: Original strand, 11587181 - 11587292
Alignment:
Q  544 gtggtgtctatgacatgttgacatcatgggaacaacctcatgttcatcaaaatatggagttaatctgacataaacagattcctttaaaagtttctatcct 643  Q
    ||||||| ||||||||| ||||||||  |||||| |||||  | |||| |  |||||||||||| || |||||| |||| ||| | ||||| ||||| ||    
T  11587181 gtggtgtgtatgacatgctgacatcacaggaacagcctcagttgcatccatctatggagttaatttggcataaatagatacctatcaaagtatctattct 11587280  T
Q  644 tgcttggcggct 655  Q
    ||||||||||||    
T  11587281 tgcttggcggct 11587292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 66 - 114
Target Start/End: Original strand, 21402206 - 21402254
Alignment:
Q  66 aaatgcaagtaaatttataaatattgatgacgtcattttagataaagat 114  Q
    |||||||||||||||||| ||||||||||| |||||| || ||||||||    
T  21402206 aaatgcaagtaaatttattaatattgatgaagtcattataaataaagat 21402254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 573 - 660
Target Start/End: Original strand, 54483171 - 54483258
Alignment:
Q  573 gaacaacctcatgttcatcaaaatatggagttaatctgacataaacagattcctttaaaagtttctatccttgcttggcggctgttga 660  Q
    |||||||||||  ||||||||| |||||||||| |||| || |||||| | ||| |||||||| |  || ||||||||||| ||||||    
T  54483171 gaacaacctcagattcatcaaagtatggagttagtctggcacaaacaggtacctctaaaagttacagtctttgcttggcggttgttga 54483258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 598 - 652
Target Start/End: Original strand, 47685932 - 47685986
Alignment:
Q  598 tggagttaatctgacataaacagattcctttaaaagtttctatccttgcttggcg 652  Q
    |||| ||||| |||||||||||| ||||| | ||||| |||||||||||||||||    
T  47685932 tggacttaatttgacataaacaggttcctctcaaagtatctatccttgcttggcg 47685986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 541 - 652
Target Start/End: Complemental strand, 46145835 - 46145724
Alignment:
Q  541 ttcgtggtgtctatgacatgttgacatcatgggaacaacctcatgtt-catcaaaatatggagttaatctgacataaacagattcctttaaaagtttcta 639  Q
    |||||||||| ||||| |||||||| ||   ||||||||| |||||| ||||||||||||||||| || || || ||| || | ||||| ||||| ||||    
T  46145835 ttcgtggtgtgtatgatatgttgacttcgcaggaacaacc-catgttacatcaaaatatggagttgatttggcacaaataggtgcctttgaaagtgtcta 46145737  T
Q  640 tccttgcttggcg 652  Q
    |  ||||||||||    
T  46145736 tttttgcttggcg 46145724  T

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Target: chr1 (Bit Score: 89; Significance: 1e-42; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 520 - 660
Target Start/End: Original strand, 37191169 - 37191309
Alignment:
Q  520 atcagattagaggttatactcttcgtggtgtctatgacatgttgacatcatgggaacaacctcatgttcatcaaaatatggagttaatctgacataaaca 619  Q
    |||||||||||||||||| | |  ||||||| ||||||||||||||||||   |||||||||||||||||||||||||||||||||||||| |||||||     
T  37191169 atcagattagaggttataatgtctgtggtgtatatgacatgttgacatcacatgaacaacctcatgttcatcaaaatatggagttaatctggcataaact 37191268  T
Q  620 gattcctttaaaagtttctatccttgcttggcggctgttga 660  Q
    | ||| ||||||||||| |||||||||||||||||||||||    
T  37191269 ggttcatttaaaagtttatatccttgcttggcggctgttga 37191309  T

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Target: chr1; HSP #2
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 531 - 660
Target Start/End: Original strand, 16917779 - 16917908
Alignment:
Q  531 ggttatactcttcgtggtgtctatgacatgttgacatcatgggaacaacctcatgttcatcaaaatatggagttaatctgacataaacagattcctttaa 630  Q
    ||||||||| |||||||||  |||||| |||||||||||  ||||||||||| |||||||||||||||||||||||| || ||||||||| |||||||||    
T  16917779 ggttatactgttcgtggtgcatatgacttgttgacatcacaggaacaacctcttgttcatcaaaatatggagttaatttggcataaacaggttcctttaa 16917878  T
Q  631 aagtttctatccttgcttggcggctgttga 660  Q
    |||||||||||||||||||||| |||||||    
T  16917879 aagtttctatccttgcttggcgactgttga 16917908  T

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Target: chr1; HSP #3
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 531 - 652
Target Start/End: Complemental strand, 43388537 - 43388416
Alignment:
Q  531 ggttatactcttcgtggtgtctatgacatgttgacatcatgggaacaacctcatgttcatcaaaatatggagttaatctgacataaacagattcctttaa 630  Q
    ||||||||| |||||||||| |||||| |||||||||||  |||||||| ||||||||||||||||||||||||||| || ||||||||| |||||||||    
T  43388537 ggttatactgttcgtggtgtatatgacttgttgacatcacaggaacaacttcatgttcatcaaaatatggagttaatttggcataaacaggttcctttaa 43388438  T
Q  631 aagtttctatccttgcttggcg 652  Q
    ||||||||||||||||||||||    
T  43388437 aagtttctatccttgcttggcg 43388416  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 147
Target Start/End: Original strand, 48046184 - 48046280
Alignment:
Q  51 gaaaaaacataaggtaaatgcaagtaaatttataaatattgatgacgtcattttagataaagatcctagtagtggtgtttcaaatgttgcataaaaa 147  Q
    |||||||||  ||||||||||||||||| |||| ||||| |||||  ||||| ||||||||||| |||  | ||||| || | ||||||||||||||    
T  48046184 gaaaaaacaagaggtaaatgcaagtaaaattatcaatatggatgagatcattatagataaagattctatgaatggtggtttatatgttgcataaaaa 48046280  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 543 - 652
Target Start/End: Complemental strand, 51052638 - 51052529
Alignment:
Q  543 cgtggtgtctatgacatgttgacatcatgggaacaacctcatgttcatcaaaatatggagttaatctgacataaacagattcctttaaaagtttctatcc 642  Q
    ||||| |||||||||||| ||||||||  ||| || || ||  | || || |||||||| ||||| || ||||||||| ||||| | ||||| |||||||    
T  51052638 cgtggagtctatgacatgctgacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggttcctctcaaagtatctatcc 51052539  T
Q  643 ttgcttggcg 652  Q
    ||||||||||    
T  51052538 ttgcttggcg 51052529  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 552 - 660
Target Start/End: Original strand, 47623068 - 47623176
Alignment:
Q  552 tatgacatgttgacatcatgggaacaacctcatgttcatcaaaatatggagttaatctgacataaacagattcctttaaaagtttctatccttgcttggc 651  Q
    ||||||||| ||||||||  ||||||||||||  | |||  | ||||||| ||||| || ||||||||| | ||| | ||||| ||||| ||||||||||    
T  47623068 tatgacatgctgacatcacaggaacaacctcagttacattcatatatggaattaatttggcataaacaggtacctctcaaagtatctattcttgcttggc 47623167  T
Q  652 ggctgttga 660  Q
    |||| ||||    
T  47623168 ggcttttga 47623176  T

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Target: scaffold0472 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 594 - 650
Target Start/End: Complemental strand, 3359 - 3303
Alignment:
Q  594 aatatggagttaatctgacataaacagattcctttaaaagtttctatccttgcttgg 650  Q
    |||||||||||||| || ||||||||| ||||| | |||||||||||||||||||||    
T  3359 aatatggagttaatttggcataaacaggttcctcttaaagtttctatccttgcttgg 3303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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