View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13634_high_6 (Length: 356)

Name: NF13634_high_6
Description: NF13634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13634_high_6
NF13634_high_6
[»] chr1 (1 HSPs)
chr1 (1-356)||(52883257-52883602)


Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 52883602 - 52883257
Alignment:
Q  1 ttaatagaaagaatgcgaagaacgaataaggcagagtagagatgttgttgatcgtgtaaattatgtttgatccaatcaagaagattgggacagtgatcgg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  52883602 ttaatagaaagaatgcgaagaacgaataaggcagagtagagatgttgttgatcgtgtaaattatgtttgatccaatcaagaagattgggacagtgatcag 52883503  T
Q  101 gataatcggaatgaagaatagttttgaggcactcaccaagttgaaccctgaaaaggaatgggaatgggaatgggaatgggaattattacaaacaggtaga 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||    
T  52883502 gataatcggaatgaagaatagttttgaggcactcaccaagttgaaccctgaaaaggaatgggaatgggaatgggaat------tattacaaacaggtaga 52883409  T
Q  201 gtgcaattgagtgagaatggagtgagtagagtaagtaaaataatgaaataacatacctcaaaagagaaggaagttgaggtaaaaagaggagaatgtgatt 300  Q
    |||||||||||||||||||||||    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52883408 gtgcaattgagtgagaatggagt----agagtaagtaaaataatgacataacatacctcaaaagagaaggaagttgaggtaaaaagaggagaatgtgatt 52883313  T
Q  301 cctaacaaagtctttatcggcgaaagagatggagtgagcagtggaagaccaattct 356  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52883312 cctaacaaagtctttatcggcgaaagagatggagtgagcagtggaagaccaattct 52883257  T

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