View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13634_high_7 (Length: 336)
Name: NF13634_high_7
Description: NF13634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13634_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 1164820 - 1164504
Alignment:
| Q |
1 |
tggaggaagaaagggaggagggggatttggaggagcagttgcaggtggaattatcggtggtgttataggcggcacactcgccaatggcggatacaatggt |
100 |
Q |
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| T |
1164820 |
tggaggaagaaagggaggagtgggatttggaggagcagttgcaggtggaattatcggtggtgttataggcggcacactcgccaatggcggacacaatggt |
1164721 |
T |
|
| Q |
101 |
gggcacaatggtactcataattctgcaacaacattatctggagggcctcatatttgtgtctcaacattgattttatgtatgagcttttggctttagacac |
200 |
Q |
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| T |
1164720 |
gggcacaatggtactcataattctgcatcaacattatcgggagggcctcatatttgtgtatcaacattgattttatgtatgagcttttggctttagacac |
1164621 |
T |
|
| Q |
201 |
atggtttcacttccacaagttaaatttcatctttagttgcttctatttaggtctacattaatctctcttaatctttattaatatcatgttttcttgttga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
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| T |
1164620 |
atggtttcacttccacaagttaaatttcatctttagttgcttctatttaggtctacattaatctctcttagtctttattaatatcatgttttcttattga |
1164521 |
T |
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| Q |
301 |
ttagtttatatcatttg |
317 |
Q |
| |
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||||||||||||||||| |
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| T |
1164520 |
ttagtttatatcatttg |
1164504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 44 - 198
Target Start/End: Complemental strand, 1148613 - 1148456
Alignment:
| Q |
44 |
ggtggaattatcggtggtg---ttataggcggcacactcgccaatggcggatacaatggtgggcacaatggtactcataattctgcaacaacattatctg |
140 |
Q |
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| T |
1148613 |
ggtggaattatcggcggtggaattgtaggcggcacagttgccaatggcggtcacaatggtgggcacaatggtactcataattctgcaacaacattatctg |
1148514 |
T |
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| Q |
141 |
gagggcctcatatttgtgtctcaacattgattttatgtatgagcttttggctttagac |
198 |
Q |
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| T |
1148513 |
cagtgcctcatttttgtgtctcaacattgattttatgtatgagcttttggctttagac |
1148456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 82 - 279
Target Start/End: Complemental strand, 1172127 - 1171928
Alignment:
| Q |
82 |
caatggcggatacaatggtgggcacaatggtactcataattctgcaacaacattatctggagggcctcatatttgtgtctcaacattgattttatgtatg |
181 |
Q |
| |
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|||||| ||||| ||||||||| ||||||| ||||| |||||||||||||||||||||| | |||||||| || ||||||| ||||||||||| ||| || |
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| T |
1172127 |
caatggtggatataatggtgggtacaatggcactcagaattctgcaacaacattatctgcatggcctcattttagtgtctccacattgattttgtgtttg |
1172028 |
T |
|
| Q |
182 |
agcttttggctttagacaca-tggtttcacttccacaagttaaatttcatctttagttgcttctatttaggtctacattaat-ctctcttaatctttatt |
279 |
Q |
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|| ||||||||||| ||||| | |||||||||| | |||| | |||||| |||||||||| ||||||| |||||||||| | |||||| |||||||| |
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| T |
1172027 |
agtttttggctttaaacacatttgtttcacttctagtagtttagtttcatttttagttgctattatttagacctacattaatccactcttagtctttatt |
1171928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 82 - 202
Target Start/End: Complemental strand, 1181375 - 1181255
Alignment:
| Q |
82 |
caatggcggatacaatggtgggcacaatggtactcataattctgcaacaacattatctggagggcctcatatttgtgtctcaacattgattttatgtatg |
181 |
Q |
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|||||| ||||| ||||||||| ||||||| ||||| |||||||||||||||||||||| | |||||||| ||||||||||||| |||||||| ||| || |
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| T |
1181375 |
caatggtggatataatggtgggtacaatggcactcagaattctgcaacaacattatctgcatggcctcatttttgtgtctcaactttgattttgtgtttg |
1181276 |
T |
|
| Q |
182 |
agcttttggctttagacacat |
202 |
Q |
| |
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|||||||||||||| |||||| |
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| T |
1181275 |
agcttttggctttaaacacat |
1181255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 121 - 221
Target Start/End: Complemental strand, 1137112 - 1137012
Alignment:
| Q |
121 |
ttctgcaacaacattatctggagggcctcatatttgtgtctcaacattgattttatgtatgagcttttggctttagacacatggtttcacttccacaagt |
220 |
Q |
| |
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||||||| || ||||||||| ||||||| || |||||||||||||||| |||||||| |||||||||||||||| |||| ||||||||||||| ||| |
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| T |
1137112 |
ttctgcaccatcattatctgcagggccttatgtttgtgtctcaacatttcttttatgtttgagcttttggctttaattacattgtttcacttccactagt |
1137013 |
T |
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| Q |
221 |
t |
221 |
Q |
| |
|
| |
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| T |
1137012 |
t |
1137012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 121 - 221
Target Start/End: Complemental strand, 1141766 - 1141666
Alignment:
| Q |
121 |
ttctgcaacaacattatctggagggcctcatatttgtgtctcaacattgattttatgtatgagcttttggctttagacacatggtttcacttccacaagt |
220 |
Q |
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||||||| || ||||||||| ||||||| || |||||||||||||||| ||||||||| ||||||||||| | || || || ||||||||||||| ||| |
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| T |
1141766 |
ttctgcatcatcattatctgcagggccttatgtttgtgtctcaacatttattttatgtttgagcttttggttataatcatattgtttcacttccactagt |
1141667 |
T |
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| Q |
221 |
t |
221 |
Q |
| |
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| |
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|
| T |
1141666 |
t |
1141666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 1181478 - 1181432
Alignment:
| Q |
3 |
gaggaagaaagggaggagggggatttggaggagcagttgcaggtgga |
49 |
Q |
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||||||||||||||||||||||||||||||||| ||| ||||||||| |
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| T |
1181478 |
gaggaagaaagggaggagggggatttggaggaggagtggcaggtgga |
1181432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 148 - 263
Target Start/End: Complemental strand, 1160124 - 1160009
Alignment:
| Q |
148 |
tcatatttgtgtctcaacattgattttatgtatgagcttttggctttagacacatggtttcacttccacaagttaaatttcatctttagttgcttctatt |
247 |
Q |
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|||| |||||||| ||||||| ||||||||| |||| |||| |||||| || | |||| |||||||| | |||| | |||| ||||||||||||| || |
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| T |
1160124 |
tcatgtttgtgtcccaacatttattttatgtttgagttttttgctttaatcatgttgttttacttccactaattaagtatcatgtttagttgcttctgtt |
1160025 |
T |
|
| Q |
248 |
taggtctacattaatc |
263 |
Q |
| |
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|||| ||| ||||||| |
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| T |
1160024 |
taggcctatattaatc |
1160009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 215
Target Start/End: Complemental strand, 1145292 - 1145198
Alignment:
| Q |
121 |
ttctgcaacaacattatctggagggcctcatatttgtgtctcaacattgattttatgtatgagcttttggctttagacacatggtttcacttcca |
215 |
Q |
| |
|
||||||||||||| | |||| | || ||||| || ||||||||||||| | ||||| ||||||||||||||||| ||||| ||||||||||| |
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| T |
1145292 |
ttctgcaacaacagtttctgcaaggactcattttggtgtctcaacatttttcttatgcatgagcttttggctttaatcacattatttcacttcca |
1145198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 195
Target Start/End: Complemental strand, 1133558 - 1133477
Alignment:
| Q |
114 |
ctcataattctgcaacaacattatctggagggcctcatatttgtgtctcaacattgattttatgtatgagcttttggcttta |
195 |
Q |
| |
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|||||||||||||| || |||| | || |||| || || ||||| |||||||||| ||||||||| | | |||||||||||| |
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| T |
1133558 |
ctcataattctgcagcatcattttatgcagggacttatttttgtttctcaacatttattttatgtgtaatcttttggcttta |
1133477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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