View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13634_low_4 (Length: 530)
Name: NF13634_low_4
Description: NF13634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13634_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 19 - 519
Target Start/End: Original strand, 43861602 - 43862102
Alignment:
| Q |
19 |
attaccacctaagagaattttgtgtgagtttgtgcaaccaaatccggaaatagttaaaaagcttcctcaaaaacaaggattgtggagaaggttttccaca |
118 |
Q |
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| T |
43861602 |
attactacctaagagaattttgtgtgagtttgtgcaaccaaatccagaaatagttaaaaagcttcctcaaaaacaaggattgtggagaaggttttccaca |
43861701 |
T |
|
| Q |
119 |
agcatttacaaaggtgttcggcgcctccgtgggaaaaaggaaagatatgcagctcagattagaaatccatttgaaaagacaactgagtaccttggtactc |
218 |
Q |
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| T |
43861702 |
agcatttacaaaggttttcggcgcctccgtgggaacaaggaaagatatgcagctcagattagaaatccatttgaaaagacaactgagtaccttggtactc |
43861801 |
T |
|
| Q |
219 |
atgataccgagtatgaagctgctttggcttatcgcagaaagactaaggagttccataaaagaaagttggctgattcgaacaaggacaaacaaggtttggc |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
43861802 |
atgataccgagtatgaagctgctttggcttatcgcagaaagactaaggagttccataaaagaaagttagctgattcgaacaaggacaaacaaggtttggc |
43861901 |
T |
|
| Q |
319 |
tcattcatctcttgaattaatcattagtactttgcttaattattatcattaattattactaacgtatcaaatttatgaagatgatgttgattatgattag |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43861902 |
tcattcatctcttgaattaatcattagtactttgcttaattattatcattaattactactaacgtatcaaatttatgaagatgatgttgattatgattag |
43862001 |
T |
|
| Q |
419 |
tgtattgttaatttgttaaggagaggaggcagttgcacctgttcttaatcaatcttgcaaggaacaagggaaagggtatgatccctctgacgatgatgat |
518 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
43862002 |
tgtattgttaatttgttaaggagaggaggcagttgcacctgttcttaatcaatattgcaaggaacaagggaaagggtatgatccctctgacgacgatgat |
43862101 |
T |
|
| Q |
519 |
g |
519 |
Q |
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| T |
43862102 |
g |
43862102 |
T |
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