View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13634_low_5 (Length: 428)
Name: NF13634_low_5
Description: NF13634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13634_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 149; Significance: 1e-78; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 122 - 289
Target Start/End: Original strand, 52738959 - 52739127
Alignment:
| Q |
122 |
aagtgttgccggttttggttttcaatccaccatggttacatttagtctctattgatgaaattgagaagaaagtaacacatgcaaagcttcaatc-tgaat |
220 |
Q |
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| T |
52738959 |
aagtgttgtcggttttggttttcaatccaccatggttacatttagtctctattgatgaaattgagaagaaagtaacacatgcaaagcttcaatcatgaat |
52739058 |
T |
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| Q |
221 |
aaatttgagaactagtaatagttgtggaggagaagaaaacttctctcgacagagaagaagaagagataa |
289 |
Q |
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| T |
52739059 |
aaatttgagaactagtaatggttggggaggagaagaaaacttctctcgacagagaagaagaagagataa |
52739127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 325 - 420
Target Start/End: Original strand, 52739166 - 52739261
Alignment:
| Q |
325 |
ttgaggtcaatttttgacttatccacacaactctgtccaacttacaaactatcactcatttttctagttattacaaaactgtcactgttgatgatg |
420 |
Q |
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| T |
52739166 |
ttgaggtcaatttttgtcttatccacacaactatgtccaacttacaaactatcactcatttttctagttattacaaaactgtcgttgttgatgatg |
52739261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 328 - 420
Target Start/End: Original strand, 26994965 - 26995059
Alignment:
| Q |
328 |
aggtcaatttttgacttatccacacaactctgtccaactta-caaactatcactca-tttttctagttattacaaaactgtcactgttgatgatg |
420 |
Q |
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| T |
26994965 |
aggtcaatttttgtcttatacacacaactctatccaacttaccaaactatcgctcattttttctagttattacaaaactgccgctgttgatgatg |
26995059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 289
Target Start/End: Original strand, 26994888 - 26994927
Alignment:
| Q |
250 |
gagaagaaaacttctctcgacagagaagaagaagagataa |
289 |
Q |
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| T |
26994888 |
gagaagaaaacttctctcaactgagaagaagaagagataa |
26994927 |
T |
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